Variant report

Variant	rs556755607
Chromosome Location	chr1:10277307-10277308
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:10270579..10272996-chr1:10274200..10277824,5	K562	blood:
2	chr1:10276579..10278410-chr1:10297316..10299169,2	K562	blood:

Variant related genes	Relation type
ENSG00000054523	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757722	chr1:10238070-10582554	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv2758920	chr1:10238070-10582554	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv999251	chr1:10276263-10318163	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10272200-10277600	Weak transcription	Esophagus	oesophagus
2	chr1:10272200-10278000	Weak transcription	Colonic Mucosa	Colon
3	chr1:10272200-10278200	Weak transcription	Placenta	Placenta
4	chr1:10272600-10277600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr1:10272600-10277800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr1:10272600-10277800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr1:10272600-10284000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr1:10272600-10284000	Weak transcription	Fetal Intestine Small	intestine
9	chr1:10272600-10368200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr1:10272800-10277600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr1:10272800-10284000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr1:10272800-10284400	Weak transcription	Gastric	stomach
13	chr1:10272800-10290000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr1:10272800-10296600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr1:10273600-10277800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr1:10273600-10278200	Weak transcription	Fetal Intestine Large	intestine
17	chr1:10274000-10277800	Weak transcription	Fetal Kidney	kidney
18	chr1:10274000-10282400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr1:10274000-10285200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr1:10274200-10277600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr1:10274200-10277800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr1:10274200-10277800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr1:10274200-10278200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr1:10274200-10284600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr1:10274400-10278000	Weak transcription	Fetal Stomach	stomach
26	chr1:10274600-10281200	Weak transcription	Fetal Muscle Trunk	muscle
27	chr1:10275400-10277400	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr1:10275400-10278600	Enhancers	Psoas Muscle	Psoas
29	chr1:10275600-10278400	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr1:10275600-10278400	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr1:10275600-10278600	Enhancers	Fetal Heart	heart
32	chr1:10275600-10278800	Enhancers	Left Ventricle	heart
33	chr1:10275600-10279000	Enhancers	Liver	Liver
34	chr1:10275800-10278000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr1:10275800-10278000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
36	chr1:10275800-10278000	Enhancers	Colon Smooth Muscle	Colon
37	chr1:10275800-10278400	Enhancers	HUVEC	blood vessel
38	chr1:10275800-10278800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr1:10275800-10278800	Enhancers	Rectal Smooth Muscle	rectum
40	chr1:10276000-10278600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr1:10276000-10278600	Enhancers	Fetal Brain Male	brain
42	chr1:10276200-10278400	Enhancers	Right Ventricle	heart
43	chr1:10276200-10278400	Enhancers	NH-A	brain
44	chr1:10276200-10278800	Enhancers	Right Atrium	heart
45	chr1:10276200-10278800	Enhancers	NHDF-Ad	bronchial
46	chr1:10276200-10279000	Enhancers	Osteobl	bone
47	chr1:10276400-10277600	Weak transcription	HepG2	liver
48	chr1:10276400-10278800	Enhancers	Brain Angular Gyrus	brain
49	chr1:10276400-10278800	Enhancers	Fetal Muscle Leg	muscle
50	chr1:10276600-10277400	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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