Variant report

Variant	rs556767557
Chromosome Location	chr3:155417711-155417712
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009618	chr3:155370034-155492177	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv829763	chr3:155417552-155470079	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155399800-155422000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:155400600-155421000	Weak transcription	Fetal Intestine Small	intestine
3	chr3:155400800-155418400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr3:155408800-155418600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr3:155409000-155419200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:155409000-155419400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr3:155409200-155418400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr3:155409200-155422200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr3:155411000-155420600	Weak transcription	Fetal Intestine Large	intestine
10	chr3:155412600-155422400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr3:155412600-155437400	Weak transcription	Pancreas	Pancrea
12	chr3:155413800-155432000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr3:155414000-155418600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:155414000-155420600	Weak transcription	Brain Germinal Matrix	brain
15	chr3:155414800-155419000	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr3:155415000-155421200	Weak transcription	Stomach Mucosa	stomach
17	chr3:155415400-155419200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr3:155415600-155418800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr3:155415600-155421400	Weak transcription	Brain Hippocampus Middle	brain
20	chr3:155416400-155418000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr3:155417400-155421600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr3:155417600-155417800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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