Variant report

Variant	rs556776286
Chromosome Location	chr4:76106666-76106667
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005324	chr4:75689880-76233555	Bivalent/Poised TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv537142	chr4:75689880-76233555	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1010552	chr4:76064415-76325430	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv1850883	chr4:76065572-76194403	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv879492	chr4:76088845-76154064	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv966200	chr4:76105747-76114266	Active TSS Enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76105600-76107000	Active TSS	Duodenum Mucosa	Duodenum
2	chr4:76105600-76107200	Active TSS	Rectal Mucosa Donor 29	rectum
3	chr4:76105800-76106800	Active TSS	Colonic Mucosa	Colon
4	chr4:76105800-76107200	Enhancers	Dnd41	blood
5	chr4:76106000-76106800	Active TSS	Rectal Smooth Muscle	rectum
6	chr4:76106000-76107000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:76106200-76106800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr4:76106200-76107000	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr4:76106200-76107000	Flanking Active TSS	GM12878-XiMat	blood
10	chr4:76106400-76106800	Enhancers	Colon Smooth Muscle	Colon
11	chr4:76106400-76107000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr4:76106400-76107200	Enhancers	Placenta	Placenta
13	chr4:76106600-76106800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr4:76106600-76106800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
15	chr4:76106600-76106800	Enhancers	Hela-S3	cervix
16	chr4:76106600-76106800	Flanking Active TSS	HepG2	liver
17	chr4:76106600-76107000	Enhancers	Primary B cells from cord blood	blood
18	chr4:76106600-76107000	Enhancers	Adipose Nuclei	Adipose
19	chr4:76106600-76107200	Enhancers	Primary B cells from peripheral blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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