Variant report

Variant	rs556777041
Chromosome Location	chr2:173818673-173818674
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173818468..173819994-chr2:173826020..173827829,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834459	chr2:173735192-173926750	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3365781	chr2:173817156-173819254	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173800600-173829400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr2:173807800-173831600	Weak transcription	Left Ventricle	heart
3	chr2:173816600-173820200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr2:173816600-173831800	Weak transcription	Lung	lung
5	chr2:173816800-173818800	Weak transcription	Hela-S3	cervix
6	chr2:173816800-173821600	Weak transcription	Fetal Thymus	thymus
7	chr2:173817000-173820200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr2:173817200-173821600	Weak transcription	Thymus	Thymus
9	chr2:173817400-173819000	Enhancers	Placenta Amnion	Placenta Amnion
10	chr2:173817600-173818800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr2:173818200-173819800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr2:173818200-173819800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr2:173818200-173820000	Enhancers	Osteobl	bone
14	chr2:173818400-173819200	Enhancers	NHLF	lung
15	chr2:173818400-173819600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr2:173818400-173819800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr2:173818400-173819800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr2:173818400-173819800	Enhancers	NHEK	skin
19	chr2:173818400-173820000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr2:173818400-173820000	Bivalent Enhancer	NHDF-Ad	bronchial
21	chr2:173818400-173820200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr2:173818600-173818800	Enhancers	H9 Cell Line	embryonic stem cell
23	chr2:173818600-173819000	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr2:173818600-173819000	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr2:173818600-173819400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr2:173818600-173819800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr2:173818600-173819800	Enhancers	NH-A	brain
28	chr2:173818600-173820000	Enhancers	Muscle Satellite Cultured Cells	--

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