Variant report

Variant	rs556777450
Chromosome Location	chr12:40868136-40868137
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899033	chr12:40758652-41122288	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	esv1848303	chr12:40867011-40887238	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv1850439	chr12:40867211-40887867	Enhancers ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv20428	chr12:40867874-40884927	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40866400-40869400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:40866600-40870600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr12:40867000-40869000	Enhancers	H9 Cell Line	embryonic stem cell
4	chr12:40867200-40868400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr12:40867200-40870600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr12:40867400-40868200	Enhancers	Fetal Brain Female	brain
7	chr12:40867400-40870400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr12:40867600-40869000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr12:40867600-40870200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr12:40867800-40868200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr12:40867800-40869000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr12:40867800-40869600	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr12:40868000-40869000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr12:40868000-40869000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr12:40868000-40869200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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