The 2.0 version of rSNPBase

Variant report

Variant rs55678828
Chromosome Location chr19:19106636-19106637
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:19084200-19107800 Weak transcription Right Atrium heart
2 chr19:19098600-19109800 Weak transcription Primary T killer memory cells from peripheral blood blood
3 chr19:19100200-19117400 Strong transcription Fetal Intestine Small intestine
4 chr19:19100600-19122800 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
5 chr19:19101000-19107200 Strong transcription Esophagus oesophagus
6 chr19:19101000-19109400 Strong transcription Lung lung
7 chr19:19101000-19109800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
8 chr19:19101000-19114000 Weak transcription Small Intestine intestine
9 chr19:19101000-19125600 Strong transcription Thymus Thymus
10 chr19:19101000-19133000 Strong transcription Fetal Thymus thymus
11 chr19:19101200-19108200 Strong transcription Primary T cells fromperipheralblood blood
12 chr19:19101200-19108400 Strong transcription Primary T regulatory cells fromperipheralblood blood
13 chr19:19101200-19108400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
14 chr19:19101200-19109400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
15 chr19:19101200-19109800 Strong transcription Primary hematopoietic stem cells short term culture blood
16 chr19:19101200-19109800 Strong transcription Primary mononuclear cells fromperipheralblood Blood
17 chr19:19101200-19110400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
18 chr19:19101200-19126000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
19 chr19:19101200-19130400 Strong transcription Duodenum Mucosa Duodenum
20 chr19:19101200-19140200 Strong transcription Primary neutrophils fromperipheralblood blood
21 chr19:19101400-19106800 Strong transcription Skeletal Muscle Male skeletal muscle
22 chr19:19101400-19109800 Strong transcription Liver Liver
23 chr19:19101400-19113000 Strong transcription Skeletal Muscle Female skeletal muscle
24 chr19:19101400-19130400 Strong transcription Primary monocytes fromperipheralblood blood
25 chr19:19101400-19142000 Strong transcription Monocytes-CD14+_RO01746 blood
26 chr19:19101600-19106800 Strong transcription Primary T helper cells PMA-I stimulated --
27 chr19:19101600-19107200 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
28 chr19:19101600-19109400 Strong transcription Adipose Nuclei Adipose
29 chr19:19101600-19130400 Strong transcription Primary T cells from cord blood blood
30 chr19:19101600-19130400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
31 chr19:19101800-19106800 Strong transcription Pancreas Pancrea
32 chr19:19101800-19106800 Strong transcription HMEC breast
33 chr19:19101800-19109600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
34 chr19:19101800-19109600 Strong transcription Primary T helper cells fromperipheralblood blood
35 chr19:19101800-19109600 Strong transcription Primary Natural Killer cells fromperipheralblood blood
36 chr19:19102000-19106800 Strong transcription Ovary ovary
37 chr19:19102000-19110000 Strong transcription Breast Myoepithelial Primary Cells Breast
38 chr19:19102000-19113000 Strong transcription Rectal Mucosa Donor 29 rectum
39 chr19:19102000-19130200 Strong transcription Sigmoid Colon Sigmoid Colon
40 chr19:19102000-19132000 Strong transcription Dnd41 blood
41 chr19:19102200-19108400 Strong transcription Aorta Aorta
42 chr19:19102200-19110400 Strong transcription Gastric stomach
43 chr19:19102400-19109800 Weak transcription Primary T killer naive cells fromperipheralblood blood
44 chr19:19102400-19111000 Strong transcription A549 lung
45 chr19:19102600-19122600 Weak transcription Fetal Heart heart
46 chr19:19102800-19108400 Strong transcription Right Ventricle heart
47 chr19:19102800-19109400 Strong transcription Spleen Spleen
48 chr19:19103000-19108200 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
49 chr19:19103200-19130200 Strong transcription Duodenum Smooth Muscle Duodenum
50 chr19:19103400-19106800 Strong transcription GM12878-XiMat blood

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Last update: Aug 31, 2015