Variant report

Variant	rs55679110
Chromosome Location	chr1:185950429-185950430
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:185949426..185951047-chr20:49348211..49350658,2	MCF-7	breast:
2	chr1:185942719..185945777-chr1:185948819..185950907,3	K562	blood:
3	chr1:185949414..185951404-chr1:185953572..185956046,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11799929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11800249	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11800686	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11801652	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11801883	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11809362	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11811425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16824844	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2383270	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2383429	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2891184	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs34460141	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs35576281	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55653538	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55861690	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55869520	0.83[AMR][1000 genomes]
rs55888716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57060687	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60150013	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60600910	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61110502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61191597	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61338512	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134233	0.83[AMR][1000 genomes]
rs74134234	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134235	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134240	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134242	0.83[AMR][1000 genomes]
rs74134245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134255	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134258	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134269	0.83[AMR][1000 genomes]
rs74134273	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185934400-185974000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr1:185934600-185969000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr1:185936600-185999000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:185937000-185964000	Weak transcription	Aorta	Aorta
5	chr1:185938800-185990200	Weak transcription	Liver	Liver
6	chr1:185938800-185994600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr1:185939000-185953600	Weak transcription	Fetal Lung	lung
8	chr1:185939000-185986000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr1:185939200-186023000	Weak transcription	Adipose Nuclei	Adipose
10	chr1:185939800-185958600	Weak transcription	Left Ventricle	heart
11	chr1:185943800-185953200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:185944200-185959400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr1:185947800-185951600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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