Variant report

Variant	rs556793518
Chromosome Location	chr9:99559235-99559236
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053215	chr9:99483926-99824810	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831660	chr9:99485058-99672080	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv520001	chr9:99533434-99795125	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv6624	chr9:99548787-99593968	ZNF genes & repeats Weak transcription Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv1824059	chr9:99557743-99589296	Strong transcription Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99552000-99560400	ZNF genes & repeats	Liver	Liver
2	chr9:99552200-99559400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr9:99555200-99559400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:99555200-99559400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
5	chr9:99555200-99560400	ZNF genes & repeats	Adipose Nuclei	Adipose
6	chr9:99555400-99559400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
7	chr9:99555600-99559400	ZNF genes & repeats	Primary B cells from cord blood	blood
8	chr9:99555600-99559400	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
9	chr9:99556000-99559400	ZNF genes & repeats	Fetal Brain Female	brain
10	chr9:99556400-99559400	ZNF genes & repeats	HSMM	muscle
11	chr9:99556600-99559400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
12	chr9:99556600-99559400	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
13	chr9:99556600-99559400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
14	chr9:99556800-99559400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
15	chr9:99556800-99559400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr9:99556800-99559400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr9:99556800-99559400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr9:99556800-99559400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr9:99556800-99559400	ZNF genes & repeats	Brain Germinal Matrix	brain
20	chr9:99556800-99559400	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
21	chr9:99556800-99559800	ZNF genes & repeats	Fetal Intestine Large	intestine
22	chr9:99557000-99559400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
23	chr9:99557000-99559400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
24	chr9:99557000-99559400	ZNF genes & repeats	Brain Anterior Caudate	brain
25	chr9:99557000-99559400	ZNF genes & repeats	Brain Substantia Nigra	brain
26	chr9:99557000-99559400	ZNF genes & repeats	Esophagus	oesophagus
27	chr9:99557000-99559400	ZNF genes & repeats	Lung	lung
28	chr9:99557000-99559400	ZNF genes & repeats	Pancreas	Pancrea
29	chr9:99557000-99559400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
30	chr9:99557000-99559400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
31	chr9:99557000-99559600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr9:99558400-99559400	Strong transcription	Stomach Smooth Muscle	stomach
33	chr9:99559000-99565600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr9:99559000-99565600	Weak transcription	Psoas Muscle	Psoas
35	chr9:99559000-99565800	Weak transcription	Rectal Smooth Muscle	rectum
36	chr9:99559200-99559600	Weak transcription	Thymus	Thymus
37	chr9:99559200-99559800	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr9:99559200-99559800	Weak transcription	Brain Angular Gyrus	brain
39	chr9:99559200-99560000	Weak transcription	Fetal Stomach	stomach
40	chr9:99559200-99565400	Weak transcription	Primary T cells from cord blood	blood
41	chr9:99559200-99565400	Weak transcription	Brain Hippocampus Middle	brain
42	chr9:99559200-99565400	Weak transcription	A549	lung
43	chr9:99559200-99565400	Weak transcription	Dnd41	blood
44	chr9:99559200-99565600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr9:99559200-99565600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr9:99559200-99565600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr9:99559200-99565600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr9:99559200-99565600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr9:99559200-99565600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr9:99559200-99565600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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