Variant report

Variant	rs55679623
Chromosome Location	chr11:93012965-93012966
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10831018	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11020238	0.80[ASN][1000 genomes]
rs11020239	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7129356	0.91[ASN][1000 genomes]
rs7129808	0.92[ASN][1000 genomes]
rs8181494	0.92[ASN][1000 genomes]
rs8181525	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93011800-93014800	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr11:93012200-93013400	Enhancers	Fetal Stomach	stomach
3	chr11:93012400-93013800	Enhancers	Fetal Kidney	kidney
4	chr11:93012800-93013400	Enhancers	Fetal Heart	heart
5	chr11:93012800-93013600	Flanking Active TSS	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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