Variant report

Variant	rs556798662
Chromosome Location	chr2:210637348-210637349
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009129	chr2:210550858-210681136	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3417338	chr2:210635907-210637905	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210636000-210637400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
2	chr2:210636000-210637400	Active TSS	Brain Germinal Matrix	brain
3	chr2:210636000-210637400	Active TSS	Fetal Brain Female	brain
4	chr2:210636000-210637400	Active TSS	NH-A	brain
5	chr2:210636000-210637600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
6	chr2:210636000-210637600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
7	chr2:210636000-210637600	Active TSS	Brain Cingulate Gyrus	brain
8	chr2:210636000-210638000	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr2:210636000-210638200	Active TSS	Brain Hippocampus Middle	brain
10	chr2:210636000-210638400	Active TSS	Brain Angular Gyrus	brain
11	chr2:210636200-210637400	Bivalent/Poised TSS	Fetal Intestine Small	intestine
12	chr2:210636400-210637400	Active TSS	H9 Cell Line	embryonic stem cell
13	chr2:210636400-210637400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr2:210636400-210638400	Active TSS	Brain Anterior Caudate	brain
15	chr2:210636400-210638400	Active TSS	Brain Inferior Temporal Lobe	brain
16	chr2:210636400-210638400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
17	chr2:210636600-210637400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
18	chr2:210637000-210637400	Active TSS	ES-I3 Cell Line	embryonic stem cell
19	chr2:210637000-210637400	Active TSS	H1 Cell Line	embryonic stem cell
20	chr2:210637000-210637400	Active TSS	Fetal Stomach	stomach
21	chr2:210637000-210637400	Enhancers	Ovary	ovary
22	chr2:210637000-210637800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr2:210637000-210638200	Weak transcription	Aorta	Aorta
24	chr2:210637200-210637400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
25	chr2:210637200-210637400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
26	chr2:210637200-210637400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
27	chr2:210637200-210637400	Bivalent Enhancer	Fetal Thymus	thymus
28	chr2:210637200-210637600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr2:210637200-210637600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr2:210637200-210637600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
31	chr2:210637200-210637600	Flanking Active TSS	Fetal Brain Male	brain
32	chr2:210637200-210638200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr2:210637200-210638600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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