Variant report

Variant	rs556813798
Chromosome Location	chr14:32364815-32364816
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv564182	chr14:32110519-32584337	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv1046526	chr14:32110537-32567426	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv526200	chr14:32308511-32454372	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv519917	chr14:32363980-32375359	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2760330	chr14:32364547-32377760	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1040337	chr14:32364547-32387656	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32358800-32366600	Weak transcription	Fetal Brain Female	brain
2	chr14:32360600-32365000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr14:32360600-32365200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:32360800-32365200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr14:32361000-32365200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr14:32361400-32365200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr14:32362000-32365200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:32362200-32365200	Enhancers	Stomach Mucosa	stomach
9	chr14:32362400-32365000	Enhancers	Brain Cingulate Gyrus	brain
10	chr14:32362400-32365200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr14:32362400-32365200	Enhancers	Brain Hippocampus Middle	brain
12	chr14:32362400-32365200	Enhancers	HMEC	breast
13	chr14:32362600-32365000	Enhancers	Fetal Stomach	stomach
14	chr14:32362600-32365200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr14:32362600-32365600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr14:32363000-32366800	Weak transcription	Fetal Lung	lung
17	chr14:32363200-32365600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr14:32363200-32366200	Weak transcription	Left Ventricle	heart
19	chr14:32363400-32365200	Enhancers	Placenta Amnion	Placenta Amnion
20	chr14:32363600-32365000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr14:32363800-32365200	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr14:32363800-32365200	Enhancers	NH-A	brain
23	chr14:32363800-32366400	Weak transcription	Brain Germinal Matrix	brain
24	chr14:32363800-32367000	Weak transcription	Fetal Heart	heart
25	chr14:32364000-32365000	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr14:32364000-32365000	Enhancers	Brain Angular Gyrus	brain
27	chr14:32364000-32365000	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr14:32364000-32365200	Enhancers	Muscle Satellite Cultured Cells	--
29	chr14:32364000-32365200	Enhancers	Brain Anterior Caudate	brain
30	chr14:32364000-32367600	Weak transcription	Gastric	stomach
31	chr14:32364200-32365000	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr14:32364200-32365000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr14:32364200-32365000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr14:32364200-32365000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr14:32364200-32365000	Enhancers	Osteobl	bone
36	chr14:32364200-32365200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr14:32364200-32365200	Enhancers	NHDF-Ad	bronchial
38	chr14:32364200-32371200	Weak transcription	Placenta	Placenta
39	chr14:32364400-32365000	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr14:32364400-32366200	Weak transcription	Primary B cells from peripheral blood	blood
41	chr14:32364400-32371000	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr14:32364600-32365000	Bivalent Enhancer	HepG2	liver
43	chr14:32364600-32365000	Enhancers	HSMM	muscle
44	chr14:32364600-32365200	Enhancers	NHEK	skin
45	chr14:32364600-32365400	Enhancers	Fetal Kidney	kidney
46	chr14:32364600-32366800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr14:32364800-32365000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
48	chr14:32364800-32365000	Enhancers	HUVEC	blood vessel
49	chr14:32364800-32367000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr14:32364800-32370400	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links