The 2.0 version of rSNPBase

Variant report

Variant rs55682120
Chromosome Location chr12:11894246-11894247
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:92 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:11873200-11902400 Weak transcription Brain Cingulate Gyrus brain
2 chr12:11873200-11909400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
3 chr12:11880400-11896200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr12:11880600-11896400 Weak transcription Fetal Stomach stomach
5 chr12:11882400-11899200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
6 chr12:11882400-11902600 Weak transcription Fetal Muscle Leg muscle
7 chr12:11882400-11903200 Weak transcription Fetal Muscle Trunk muscle
8 chr12:11883200-11894400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
9 chr12:11883600-11896200 Weak transcription Colon Smooth Muscle Colon
10 chr12:11883800-11906000 Weak transcription Liver Liver
11 chr12:11884200-11896200 Weak transcription Rectal Smooth Muscle rectum
12 chr12:11884200-11899000 Weak transcription Fetal Adrenal Gland Adrenal Gland
13 chr12:11885200-11906200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
14 chr12:11885600-11898600 Weak transcription Primary T cells from cord blood blood
15 chr12:11885600-11899000 Weak transcription Rectal Mucosa Donor 31 rectum
16 chr12:11885600-11905200 Weak transcription Fetal Intestine Large intestine
17 chr12:11885800-11896800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
18 chr12:11885800-11898400 Weak transcription Rectal Mucosa Donor 29 rectum
19 chr12:11885800-11911600 Weak transcription Primary T helper naive cells fromperipheralblood blood
20 chr12:11886000-11900000 Weak transcription Colonic Mucosa Colon
21 chr12:11886800-11897800 Genic enhancers Primary hematopoietic stem cells short term culture blood
22 chr12:11887800-11896400 Weak transcription Dnd41 blood
23 chr12:11889800-11896800 Weak transcription Fetal Kidney kidney
24 chr12:11889800-11901800 Enhancers Breast Myoepithelial Primary Cells Breast
25 chr12:11890000-11902400 Weak transcription Brain Hippocampus Middle brain
26 chr12:11890200-11894400 Weak transcription Skeletal Muscle Male skeletal muscle
27 chr12:11891200-11894600 Genic enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
28 chr12:11891200-11896000 Weak transcription Stomach Smooth Muscle stomach
29 chr12:11891600-11894800 Genic enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
30 chr12:11891600-11896000 Weak transcription Primary monocytes fromperipheralblood blood
31 chr12:11892000-11894600 Enhancers Primary B cells from cord blood blood
32 chr12:11892000-11896400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
33 chr12:11892200-11894600 Enhancers Aorta Aorta
34 chr12:11892200-11895000 Enhancers Fetal Thymus thymus
35 chr12:11892400-11895000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
36 chr12:11892400-11896800 Weak transcription Right Ventricle heart
37 chr12:11892400-11898600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
38 chr12:11892600-11894400 Enhancers Primary B cells from peripheral blood blood
39 chr12:11892600-11896600 Enhancers Stomach Mucosa stomach
40 chr12:11892800-11895000 Enhancers Small Intestine intestine
41 chr12:11893000-11896800 Enhancers Primary hematopoietic stem cells blood
42 chr12:11893200-11894600 Enhancers Duodenum Smooth Muscle Duodenum
43 chr12:11893200-11915000 Weak transcription Primary T helper naive cells from peripheral blood blood
44 chr12:11893400-11895400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
45 chr12:11893400-11895400 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
46 chr12:11893400-11896400 Genic enhancers GM12878-XiMat blood
47 chr12:11893600-11895000 Enhancers Primary T helper cells PMA-I stimulated --
48 chr12:11893600-11895400 Enhancers Thymus Thymus
49 chr12:11893600-11897800 Enhancers ES-UCSF4 Cell Line embryonic stem cell
50 chr12:11893800-11894400 Enhancers Duodenum Mucosa Duodenum

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Last update: Aug 31, 2015