Variant report

Variant	rs55683142
Chromosome Location	chr20:24372640-24372641
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs55910563	0.92[AFR][1000 genomes]
rs58993656	0.92[AFR][1000 genomes]
rs60420651	0.92[AFR][1000 genomes]
rs73901994	0.92[AFR][1000 genomes]
rs73902000	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24370400-24372800	Enhancers	Primary T cells from cord blood	blood
2	chr20:24370600-24376200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr20:24370600-24387400	Weak transcription	Right Atrium	heart
4	chr20:24371600-24376000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr20:24372600-24372800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
6	chr20:24372600-24372800	Enhancers	Fetal Thymus	thymus
7	chr20:24372600-24372800	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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