Variant report

Variant	rs556857742
Chromosome Location	chr14:31153886-31153887
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr14:31153765-31153916	MCF10A-Er-Src	breast:	n/a	chr14:31153813-31153836

Variant related genes	Relation type
UBE2CP1	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564169	chr14:30819087-31541494	Strong transcription Genic enhancers ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1036419	chr14:30969616-31224226	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv901581	chr14:30978745-31585289	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	esv3372805	chr14:31150454-31154300	Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3408766	chr14:31153051-31160649	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3428769	chr14:31153873-31154055	Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31093800-31159600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:31096000-31167400	Weak transcription	Gastric	stomach
3	chr14:31113800-31205400	Weak transcription	Fetal Brain Male	brain
4	chr14:31115000-31167600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr14:31115200-31159600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr14:31121600-31159600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr14:31122400-31159600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr14:31122800-31205200	Weak transcription	Brain Angular Gyrus	brain
9	chr14:31123000-31212000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr14:31123400-31216400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr14:31123600-31159800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr14:31123600-31165400	Weak transcription	Colonic Mucosa	Colon
13	chr14:31124400-31160200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr14:31124400-31171400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr14:31125000-31159600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr14:31125200-31170000	Weak transcription	Colon Smooth Muscle	Colon
17	chr14:31125400-31160000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr14:31128200-31164600	Weak transcription	Brain Anterior Caudate	brain
19	chr14:31128200-31165600	Weak transcription	HSMMtube	muscle
20	chr14:31132400-31160400	Weak transcription	Hela-S3	cervix
21	chr14:31133200-31160600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr14:31133800-31154000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr14:31133800-31159600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr14:31133800-31159600	Weak transcription	Esophagus	oesophagus
25	chr14:31133800-31197400	Weak transcription	Aorta	Aorta
26	chr14:31134200-31167000	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr14:31141600-31167400	Weak transcription	Psoas Muscle	Psoas
28	chr14:31142200-31160200	Weak transcription	Fetal Heart	heart
29	chr14:31142200-31164800	Weak transcription	Fetal Intestine Small	intestine
30	chr14:31143400-31159800	Weak transcription	HUVEC	blood vessel
31	chr14:31145200-31160200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr14:31146200-31159600	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr14:31146600-31165600	Weak transcription	Brain Germinal Matrix	brain
34	chr14:31146600-31165600	Weak transcription	Fetal Thymus	thymus
35	chr14:31147800-31160200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr14:31148600-31159600	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr14:31149200-31160000	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr14:31149400-31164000	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr14:31150000-31159600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr14:31150000-31166800	Weak transcription	Fetal Lung	lung
41	chr14:31152000-31159600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr14:31152000-31160000	Weak transcription	HMEC	breast
43	chr14:31152800-31159600	Weak transcription	Pancreas	Pancrea
44	chr14:31152800-31164600	Weak transcription	Lung	lung
45	chr14:31152800-31165800	Weak transcription	NHLF	lung
46	chr14:31153000-31159600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr14:31153000-31159600	Weak transcription	Placenta	Placenta
48	chr14:31153000-31159600	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr14:31153000-31160000	Weak transcription	GM12878-XiMat	blood
50	chr14:31153000-31164000	Weak transcription	Muscle Satellite Cultured Cells	--

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