Variant report

Variant	rs556868525
Chromosome Location	chr4:30824245-30824246
allele	-/TT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4285	chr4:30815642-30838784	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv499039	chr4:30819213-30830142	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30813800-30835800	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:30820400-30824600	Weak transcription	Aorta	Aorta
3	chr4:30822800-30824400	Enhancers	Fetal Heart	heart
4	chr4:30823000-30825000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:30823200-30825200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr4:30823800-30826600	Weak transcription	HUVEC	blood vessel
7	chr4:30823800-30827000	Weak transcription	Fetal Muscle Leg	muscle
8	chr4:30824000-30824800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr4:30824000-30825000	Weak transcription	Right Ventricle	heart
10	chr4:30824200-30824800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:30824200-30825200	Enhancers	Hela-S3	cervix
12	chr4:30824200-30826200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr4:30824200-30826400	Weak transcription	NH-A	brain
14	chr4:30824200-30826800	Weak transcription	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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