Variant report

Variant	rs55687320
Chromosome Location	chr16:81854187-81854188
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs56051434	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56204860	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56237642	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
2	nsv573365	chr16:81804972-81975892	Strong transcription Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1061544	chr16:81834313-81877375	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81843200-81858200	Weak transcription	Fetal Intestine Small	intestine
2	chr16:81849000-81858800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr16:81849200-81854600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr16:81849400-81854800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr16:81849400-81854800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr16:81849400-81854800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr16:81849400-81855000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr16:81849400-81855000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr16:81849400-81855000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr16:81849400-81855600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr16:81850600-81855400	Enhancers	Primary hematopoietic stem cells	blood
12	chr16:81850800-81868200	Weak transcription	Esophagus	oesophagus
13	chr16:81851600-81855000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr16:81852000-81855400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr16:81852200-81854600	Enhancers	Primary B cells from cord blood	blood
16	chr16:81852200-81855000	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr16:81852200-81856600	Weak transcription	Adipose Nuclei	Adipose
18	chr16:81852200-81856600	Weak transcription	Right Atrium	heart
19	chr16:81852400-81854400	Weak transcription	Duodenum Mucosa	Duodenum
20	chr16:81852400-81854800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr16:81852400-81854800	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr16:81852400-81855200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr16:81852400-81855200	Weak transcription	Thymus	Thymus
24	chr16:81852600-81854200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr16:81852600-81855800	Weak transcription	Brain Hippocampus Middle	brain
26	chr16:81852800-81854600	Weak transcription	Fetal Thymus	thymus
27	chr16:81852800-81854600	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr16:81852800-81856600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr16:81852800-81858200	Weak transcription	Lung	lung
30	chr16:81853000-81854600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr16:81853000-81855000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr16:81853000-81855000	Weak transcription	Spleen	Spleen
33	chr16:81853200-81854200	Flanking Active TSS	GM12878-XiMat	blood
34	chr16:81853400-81855000	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr16:81853600-81857200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr16:81853800-81854800	Enhancers	Primary B cells from peripheral blood	blood
37	chr16:81853800-81854800	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr16:81854000-81854200	Enhancers	iPS-15b Cell Line	embryonic stem cell
39	chr16:81854000-81854800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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