Variant report

Variant	rs55687913
Chromosome Location	chr14:77762898-77762899
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:77744963..77747141-chr14:77762245..77764781,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000009830	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17105685	1.00[ASN][1000 genomes]
rs57387598	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66502123	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67600987	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72681246	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73311333	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8006367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77739600-77775600	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr14:77740200-77766800	Strong transcription	Cortex derived primary cultured neurospheres	brain
3	chr14:77740200-77769800	Weak transcription	Small Intestine	intestine
4	chr14:77740400-77766000	Weak transcription	Stomach Mucosa	stomach
5	chr14:77740800-77766200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr14:77741000-77767400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr14:77741800-77773600	Weak transcription	GM12878-XiMat	blood
8	chr14:77742000-77766600	Strong transcription	Placenta	Placenta
9	chr14:77742200-77767600	Strong transcription	Stomach Smooth Muscle	stomach
10	chr14:77742400-77766400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr14:77742400-77766400	Strong transcription	Adipose Nuclei	Adipose
12	chr14:77742400-77780200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr14:77742600-77766600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr14:77744000-77771400	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr14:77746600-77767200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr14:77749200-77766400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr14:77749400-77763000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr14:77750200-77767400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr14:77750800-77768000	Weak transcription	K562	blood
20	chr14:77751200-77764600	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr14:77751400-77769200	Weak transcription	NHLF	lung
22	chr14:77751400-77769800	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr14:77751400-77775600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr14:77751400-77786200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr14:77751800-77767600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr14:77751800-77775600	Weak transcription	Thymus	Thymus
27	chr14:77752200-77775600	Weak transcription	Fetal Thymus	thymus
28	chr14:77752600-77773000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr14:77752600-77779200	Weak transcription	Fetal Heart	heart
30	chr14:77753000-77764000	Weak transcription	Primary B cells from peripheral blood	blood
31	chr14:77753600-77771800	Weak transcription	Fetal Brain Male	brain
32	chr14:77753800-77764400	Weak transcription	Rectal Smooth Muscle	rectum
33	chr14:77754400-77763800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr14:77754600-77769200	Weak transcription	NHDF-Ad	bronchial
35	chr14:77754600-77771000	Weak transcription	Primary hematopoietic stem cells	blood
36	chr14:77756600-77766600	Strong transcription	Brain Cingulate Gyrus	brain
37	chr14:77756800-77767200	Strong transcription	Fetal Muscle Leg	muscle
38	chr14:77757600-77767600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr14:77758200-77765200	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr14:77758400-77767800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr14:77758600-77763200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr14:77759200-77765800	Weak transcription	HUVEC	blood vessel
43	chr14:77759400-77763800	Weak transcription	NH-A	brain
44	chr14:77759400-77764400	Weak transcription	Fetal Lung	lung
45	chr14:77759400-77767600	Weak transcription	Psoas Muscle	Psoas
46	chr14:77759600-77764200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr14:77760000-77763800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr14:77760000-77766400	Strong transcription	Liver	Liver
49	chr14:77760400-77764800	Weak transcription	HSMMtube	muscle
50	chr14:77760400-77773000	Strong transcription	Fetal Stomach	stomach

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