Variant report

Variant	rs556890690
Chromosome Location	chr11:9112389-9112390
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F6	chr11:9112327-9112838	H1-hESC	embryonic stem cell:	n/a	chr11:9112594-9112608 chr11:9112703-9112715
2	CTCF	chr11:9112320-9112470	HUVEC	blood vessel:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:9110779..9112949-chr14:50359771..50361759,2	MCF-7	breast:
2	chr11:9108004..9116385-chr11:9156452..9162678,21	MCF-7	breast:
3	chr11:9109700..9116224-chr11:9155740..9163743,14	MCF-7	breast:
4	chr11:9109535..9113708-chr11:9115640..9120311,8	MCF-7	breast:

Variant related genes	Relation type
KRT8P41	TF binding region
MIR5691	TF binding region
ENSG00000165527	Chromatin interaction
ENSG00000213538	Chromatin interaction
ENSG00000175356	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv33264	chr11:9007612-9311131	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv896985	chr11:9013002-9152463	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv467704	chr11:9059192-9125301	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
5	nsv553454	chr11:9059192-9125301	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
6	nsv467706	chr11:9077652-9114999	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
7	nsv553455	chr11:9077652-9114999	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
8	esv3404280	chr11:9111401-9114249	Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region miRNA	5 gene(s)	inside rSNPs	diseases
9	esv3451461	chr11:9112126-9114374	Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9088200-9112400	Weak transcription	HSMM	muscle
2	chr11:9103400-9112400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:9109800-9112400	Weak transcription	Right Atrium	heart
4	chr11:9110800-9112400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:9110800-9112600	Enhancers	Lung	lung
6	chr11:9110800-9112600	Enhancers	Spleen	Spleen
7	chr11:9111200-9112400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:9111200-9112400	Enhancers	HMEC	breast
9	chr11:9111400-9113400	Weak transcription	HSMMtube	muscle
10	chr11:9111400-9113800	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr11:9111600-9112400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:9111600-9112400	Weak transcription	Psoas Muscle	Psoas
13	chr11:9111600-9113400	Active TSS	Rectal Smooth Muscle	rectum
14	chr11:9111800-9112400	Weak transcription	Brain Substantia Nigra	brain
15	chr11:9111800-9112400	Weak transcription	Colonic Mucosa	Colon
16	chr11:9112000-9112400	Weak transcription	Gastric	stomach
17	chr11:9112000-9112600	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr11:9112000-9112800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
19	chr11:9112000-9112800	Flanking Active TSS	Stomach Smooth Muscle	stomach
20	chr11:9112000-9113000	Bivalent Enhancer	Fetal Brain Male	brain
21	chr11:9112200-9112400	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
22	chr11:9112200-9112400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
23	chr11:9112200-9112400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
24	chr11:9112200-9112400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr11:9112200-9112400	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr11:9112200-9112400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr11:9112200-9112400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr11:9112200-9112400	Bivalent/Poised TSS	Brain Germinal Matrix	brain
29	chr11:9112200-9112400	Enhancers	Brain Hippocampus Middle	brain
30	chr11:9112200-9112400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
31	chr11:9112200-9112400	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
32	chr11:9112200-9112400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
33	chr11:9112200-9112400	Bivalent/Poised TSS	Fetal Intestine Small	intestine
34	chr11:9112200-9112400	Flanking Active TSS	Pancreas	Pancrea
35	chr11:9112200-9112400	Enhancers	HUVEC	blood vessel
36	chr11:9112200-9112400	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
37	chr11:9112200-9112400	Enhancers	NH-A	brain
38	chr11:9112200-9112400	Enhancers	NHDF-Ad	bronchial
39	chr11:9112200-9112400	Bivalent/Poised TSS	Osteobl	bone
40	chr11:9112200-9112600	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr11:9112200-9112600	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr11:9112200-9112600	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
43	chr11:9112200-9112600	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
44	chr11:9112200-9112600	Flanking Active TSS	Fetal Lung	lung
45	chr11:9112200-9112600	Bivalent Enhancer	Placenta	Placenta
46	chr11:9112200-9112600	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
47	chr11:9112200-9112600	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
48	chr11:9112200-9112600	Bivalent Enhancer	Stomach Mucosa	stomach
49	chr11:9112200-9112800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
50	chr11:9112200-9112800	Bivalent Enhancer	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links