Variant report

Variant	rs556899998
Chromosome Location	chr2:114430226-114430227
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001195	chr2:114362003-114506330	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv508163	chr2:114364609-114431004	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv979109	chr2:114429638-114495192	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv979339	chr2:114430138-114495192	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114424800-114433400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr2:114429400-114430600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
3	chr2:114429400-114430600	Enhancers	H9 Cell Line	embryonic stem cell
4	chr2:114429400-114430600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:114429400-114430800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr2:114429400-114434800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr2:114429600-114430400	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr2:114429600-114430600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
9	chr2:114429600-114430600	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr2:114429600-114430600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr2:114429600-114431000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr2:114429800-114430600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr2:114429800-114433000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr2:114430000-114430400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
15	chr2:114430000-114431200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr2:114430200-114430600	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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