Variant report

Variant	rs55690962
Chromosome Location	chr11:85875634-85875635
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85778960..85780498-chr11:85875598..85877997,2	MCF-7	breast:
2	chr11:85873974..85877106-chr11:85877534..85882400,5	K562	blood:
3	chr11:85874463..85876694-chr11:85880902..85882501,2	MCF-7	breast:
4	chr11:85859696..85863993-chr11:85872249..85875647,5	K562	blood:

Variant related genes	Relation type
ENSG00000073921	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs6592273	0.91[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs6592274	0.85[ASN][1000 genomes]
rs7926363	0.90[ASN][1000 genomes]
rs7937794	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	esv2757460	chr11:85869944-85905513	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2759846	chr11:85869944-85905513	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85867400-85875800	Enhancers	Placenta	Placenta
2	chr11:85868000-85876200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr11:85868800-85876600	Enhancers	Hela-S3	cervix
4	chr11:85870200-85875800	Enhancers	Brain Hippocampus Middle	brain
5	chr11:85870600-85875800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr11:85871000-85876000	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr11:85871800-85876000	Enhancers	Adipose Nuclei	Adipose
8	chr11:85873400-85878800	Weak transcription	HepG2	liver
9	chr11:85873600-85878800	Weak transcription	Left Ventricle	heart
10	chr11:85873600-85883800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr11:85873600-85883800	Weak transcription	HSMMtube	muscle
12	chr11:85873600-85884000	Weak transcription	Right Atrium	heart
13	chr11:85873800-85883800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr11:85874000-85885400	Weak transcription	Small Intestine	intestine
15	chr11:85874200-85884000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr11:85874400-85875800	Weak transcription	NHEK	skin
17	chr11:85874400-85876000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr11:85874400-85876200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:85874400-85876200	Weak transcription	Colon Smooth Muscle	Colon
20	chr11:85874400-85878600	Weak transcription	Fetal Lung	lung
21	chr11:85874600-85875800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:85874600-85876000	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr11:85874600-85876800	Enhancers	K562	blood
24	chr11:85874600-85878600	Weak transcription	Fetal Stomach	stomach
25	chr11:85874600-85878800	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr11:85874600-85884000	Weak transcription	A549	lung
27	chr11:85875000-85883800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr11:85875200-85875800	Enhancers	HSMM	muscle
29	chr11:85875200-85878600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr11:85875200-85878800	Weak transcription	Fetal Muscle Leg	muscle
31	chr11:85875400-85876400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr11:85875400-85876600	Enhancers	HMEC	breast
33	chr11:85875400-85883600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr11:85875600-85876400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr11:85875600-85876800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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