Variant report

Variant	rs556915142
Chromosome Location	chr17:45251138-45251139
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:45250177..45252891-chr17:45399741..45402575,2	K562	blood:
2	chr17:45249552..45252803-chr17:45263494..45265675,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178852	Chromatin interaction
ENSG00000263293	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062983	chr17:45030095-45789543	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv833467	chr17:45063935-45252624	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv3584	chr17:45246216-45265642	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv3790	chr17:45247093-45261518	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3344584	chr17:45247298-45258989	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv6873	chr17:45247370-45266575	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	esv3438623	chr17:45249255-45266618	Genic enhancers Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	esv3437669	chr17:45249306-45259022	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	esv8330	chr17:45249307-45266621	Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	esv3314728	chr17:45249324-45258982	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	esv3314730	chr17:45249324-45258982	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	esv3431737	chr17:45249325-45259054	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	esv3374428	chr17:45249343-45266580	Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
14	esv3362151	chr17:45249372-45258977	ZNF genes & repeats Strong transcription Genic enhancers Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
15	esv3450592	chr17:45249392-45258947	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:45246400-45251600	Weak transcription	Fetal Brain Female	brain
2	chr17:45246600-45251600	Weak transcription	Brain Germinal Matrix	brain
3	chr17:45246800-45251200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr17:45246800-45254400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr17:45247600-45255400	Strong transcription	HepG2	liver
6	chr17:45249200-45251200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr17:45249400-45251200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr17:45249400-45256200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr17:45249600-45251200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr17:45249600-45251200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr17:45249600-45251200	Weak transcription	Adipose Nuclei	Adipose
12	chr17:45249600-45251200	Weak transcription	Fetal Intestine Small	intestine
13	chr17:45249600-45251200	Weak transcription	Fetal Muscle Leg	muscle
14	chr17:45249600-45251200	Weak transcription	Fetal Stomach	stomach
15	chr17:45249600-45251400	Weak transcription	Primary T cells from cord blood	blood
16	chr17:45249600-45251400	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr17:45249600-45251400	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr17:45249600-45251400	Weak transcription	Liver	Liver
19	chr17:45249600-45251400	Weak transcription	K562	blood
20	chr17:45249600-45251600	Weak transcription	Right Ventricle	heart
21	chr17:45249600-45252200	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr17:45249600-45252200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr17:45249600-45252400	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr17:45249600-45252400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr17:45249600-45252400	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr17:45249600-45252400	Weak transcription	Fetal Muscle Trunk	muscle
27	chr17:45249600-45252400	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr17:45249600-45252400	Weak transcription	NHDF-Ad	bronchial
29	chr17:45249600-45252400	Weak transcription	NHEK	skin
30	chr17:45249600-45252600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr17:45249600-45252600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr17:45249600-45252600	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr17:45249600-45252600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr17:45249600-45252600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr17:45249600-45252600	Weak transcription	NH-A	brain
36	chr17:45249600-45252800	Weak transcription	Primary hematopoietic stem cells	blood
37	chr17:45249600-45252800	Weak transcription	Duodenum Mucosa	Duodenum
38	chr17:45249600-45252800	Weak transcription	Thymus	Thymus
39	chr17:45249600-45253000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr17:45249600-45253200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr17:45249600-45253400	Strong transcription	Primary B cells from cord blood	blood
42	chr17:45249600-45253600	Weak transcription	Colon Smooth Muscle	Colon
43	chr17:45249600-45253800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr17:45249600-45253800	Weak transcription	Hela-S3	cervix
45	chr17:45249600-45254000	Weak transcription	Fetal Lung	lung
46	chr17:45249600-45254000	Weak transcription	HMEC	breast
47	chr17:45249600-45254400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr17:45249600-45254400	Weak transcription	Placenta	Placenta
49	chr17:45249600-45254600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr17:45249600-45254600	Weak transcription	Brain Anterior Caudate	brain

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