Variant report

Variant	rs55691656
Chromosome Location	chr17:66791074-66791075
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:66790371..66791470-chr17:66967983..66969294,6	MCF-7	breast:
2	chr17:66790796..66791327-chr8:90031920..90032588,2	MCF-7	breast:
3	chr17:66790300..66791288-chr17:66907471..66908085,3	MCF-7	breast:
4	chr17:66790411..66791366-chr17:67054059..67054582,2	K562	blood:
5	chr17:66789980..66791367-chr17:66902438..66903724,8	MCF-7	breast:
6	chr17:66790395..66791436-chr17:67231389..67232511,9	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs2197242	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2197244	0.87[ASN][1000 genomes]
rs4968951	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4968952	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4968954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4968958	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs55925740	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7207844	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs8068546	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8074899	0.99[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8076838	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs8081848	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs8182251	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9893822	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9902776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs993496	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv575927	chr17:66787428-66817866	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66786400-66791200	Enhancers	Muscle Satellite Cultured Cells	--
2	chr17:66786400-66791800	Enhancers	Fetal Lung	lung
3	chr17:66786400-66791800	Enhancers	NHLF	lung
4	chr17:66786600-66791200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr17:66787000-66791400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr17:66787000-66791800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr17:66787200-66791800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr17:66787800-66791600	Enhancers	Fetal Stomach	stomach
9	chr17:66788000-66791200	Enhancers	Brain Hippocampus Middle	brain
10	chr17:66788000-66791200	Enhancers	Brain Substantia Nigra	brain
11	chr17:66788000-66791200	Enhancers	Hela-S3	cervix
12	chr17:66788000-66791600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr17:66788000-66805800	Weak transcription	Right Atrium	heart
14	chr17:66788200-66791200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr17:66788400-66791200	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr17:66788400-66791600	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr17:66788400-66791600	Enhancers	A549	lung
18	chr17:66788600-66791400	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr17:66788600-66791800	Enhancers	HUVEC	blood vessel
20	chr17:66788800-66791400	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr17:66788800-66791400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr17:66788800-66791600	Enhancers	Ovary	ovary
23	chr17:66789000-66791200	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr17:66789200-66791200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr17:66789200-66791200	Enhancers	Fetal Intestine Small	intestine
26	chr17:66789200-66791400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr17:66789200-66791600	Enhancers	K562	blood
28	chr17:66789200-66791800	Enhancers	Brain Angular Gyrus	brain
29	chr17:66789200-66791800	Enhancers	Fetal Intestine Large	intestine
30	chr17:66789200-66792400	Enhancers	Fetal Muscle Leg	muscle
31	chr17:66789600-66791200	Weak transcription	Rectal Smooth Muscle	rectum
32	chr17:66789800-66791200	Enhancers	Sigmoid Colon	Sigmoid Colon
33	chr17:66789800-66791800	Enhancers	Stomach Mucosa	stomach
34	chr17:66790000-66791400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr17:66790000-66791400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr17:66790000-66791400	Enhancers	NH-A	brain
37	chr17:66790200-66791200	Enhancers	Duodenum Mucosa	Duodenum
38	chr17:66790200-66791800	Enhancers	Placenta	Placenta
39	chr17:66790200-66792600	Enhancers	HepG2	liver
40	chr17:66790400-66791200	Weak transcription	HSMMtube	muscle
41	chr17:66790400-66791400	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr17:66790600-66791400	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr17:66790600-66791600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr17:66790600-66791800	Flanking Active TSS	Liver	Liver
45	chr17:66790600-66791800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
46	chr17:66790800-66791200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr17:66790800-66791200	Enhancers	HUES64 Cell Line	embryonic stem cell
48	chr17:66790800-66791400	Enhancers	iPS-15b Cell Line	embryonic stem cell
49	chr17:66790800-66791400	Enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr17:66790800-66791400	Enhancers	Primary hematopoietic stem cells	blood

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