Variant report

Variant	rs556938501
Chromosome Location	chr2:33758957-33758958
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:33756995..33759819-chr2:33761668..33764619,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv433177	chr2:33758456-33765955	Genic enhancers Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
2	nsv456130	chr2:33758456-33765955	Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv456141	chr2:33758456-33765955	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
4	nsv581310	chr2:33758456-33765955	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
5	esv1825472	chr2:33758456-33766808	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
6	esv1828982	chr2:33758456-33766808	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
7	esv1828986	chr2:33758456-33772525	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
8	nsv516338	chr2:33758456-33780231	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33710400-33775400	Weak transcription	Pancreas	Pancrea
2	chr2:33735400-33761800	Weak transcription	Spleen	Spleen
3	chr2:33737600-33760800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr2:33738600-33782800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr2:33738800-33777200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr2:33739200-33761800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr2:33740800-33790000	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr2:33747400-33761800	Weak transcription	Aorta	Aorta
9	chr2:33747800-33780200	Weak transcription	Brain Anterior Caudate	brain
10	chr2:33748000-33761800	Weak transcription	Fetal Stomach	stomach
11	chr2:33748000-33774400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr2:33748000-33790400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr2:33748200-33780200	Weak transcription	Brain Angular Gyrus	brain
14	chr2:33753000-33760600	Weak transcription	Adipose Nuclei	Adipose
15	chr2:33754200-33760400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr2:33754200-33761800	Weak transcription	Primary hematopoietic stem cells	blood
17	chr2:33755000-33779800	Weak transcription	Small Intestine	intestine
18	chr2:33755200-33762800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr2:33755200-33767800	Weak transcription	Liver	Liver
20	chr2:33755400-33779800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr2:33756200-33759000	Genic enhancers	Primary B cells from peripheral blood	blood
22	chr2:33756400-33759200	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr2:33757000-33780000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr2:33757200-33759000	Genic enhancers	GM12878-XiMat	blood
25	chr2:33757200-33760200	Weak transcription	Brain Substantia Nigra	brain
26	chr2:33757200-33760400	Weak transcription	HSMMtube	muscle
27	chr2:33757200-33760600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr2:33757200-33760600	Weak transcription	Brain Hippocampus Middle	brain
29	chr2:33757200-33760800	Weak transcription	Fetal Muscle Leg	muscle
30	chr2:33757200-33760800	Weak transcription	Right Ventricle	heart
31	chr2:33757200-33765400	Weak transcription	Right Atrium	heart
32	chr2:33757200-33809800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr2:33757400-33760400	Weak transcription	HSMM	muscle
34	chr2:33757400-33760600	Weak transcription	Left Ventricle	heart
35	chr2:33757400-33761800	Weak transcription	Ovary	ovary
36	chr2:33757600-33761800	Weak transcription	Lung	lung
37	chr2:33757600-33765200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr2:33757800-33760400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr2:33757800-33760400	Weak transcription	NHDF-Ad	bronchial
40	chr2:33757800-33761800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr2:33758400-33760200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr2:33758600-33759000	Genic enhancers	Primary B cells from cord blood	blood
43	chr2:33758600-33760200	Weak transcription	Fetal Heart	heart
44	chr2:33758800-33760200	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr2:33758800-33760800	Weak transcription	Psoas Muscle	Psoas

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