Variant report

Variant	rs55694993
Chromosome Location	chr7:63362661-63362662
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10225191	0.89[AFR][1000 genomes]
rs10232230	0.89[AFR][1000 genomes]
rs10248795	0.89[AFR][1000 genomes]
rs10251669	0.84[AFR][1000 genomes]
rs10272760	1.00[AFR][1000 genomes]
rs10275509	0.89[AFR][1000 genomes]
rs28450603	0.95[AFR][1000 genomes]
rs28687829	0.95[AFR][1000 genomes]
rs9918695	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888255	chr7:63175168-63990100	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
2	nsv888257	chr7:63226279-63464342	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv888258	chr7:63294907-63537173	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv534361	chr7:63328472-63955286	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
5	nsv966815	chr7:63359141-63370063	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:63360800-63365400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
2	chr7:63361800-63370800	Weak transcription	Aorta	Aorta
3	chr7:63361800-63372800	Weak transcription	Esophagus	oesophagus
4	chr7:63361800-63379000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr7:63362000-63363200	Transcr. at gene 5' and 3'	Dnd41	blood
6	chr7:63362000-63366600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr7:63362200-63364600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr7:63362200-63372800	Weak transcription	Ovary	ovary
9	chr7:63362200-63376200	Weak transcription	Colon Smooth Muscle	Colon
10	chr7:63362400-63362800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr7:63362400-63372800	Weak transcription	Brain Anterior Caudate	brain
12	chr7:63362400-63372800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr7:63362400-63384400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr7:63362600-63363000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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