Variant report

Variant	rs55695015
Chromosome Location	chr2:96501763-96501764
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs3901108	1.00[EUR][1000 genomes]
rs56192525	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57273135	0.87[EUR][1000 genomes]
rs6707224	0.87[EUR][1000 genomes]
rs67216602	0.80[EUR][1000 genomes]
rs72823924	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72823927	0.87[EUR][1000 genomes]
rs72823940	0.81[EUR][1000 genomes]
rs72931721	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3416818	chr2:96072529-96680708	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv874660	chr2:96091132-96669134	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv516044	chr2:96150959-96683378	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	nsv1003371	chr2:96326106-96684876	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv874662	chr2:96334397-96578621	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv874664	chr2:96370571-96534132	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv874665	chr2:96370571-96596515	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv874666	chr2:96370571-96691125	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv1004482	chr2:96408987-96596717	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Bivalent Enhancer	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv834303	chr2:96432935-96551704	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv428054	chr2:96438238-96627125	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv961832	chr2:96453677-96671971	Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
13	nsv874667	chr2:96465201-96596515	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv874668	chr2:96465201-96600569	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases
15	esv1826589	chr2:96468292-96583910	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases
16	esv1826305	chr2:96468492-96583710	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases
17	esv1848259	chr2:96477989-96583252	ZNF genes & repeats Strong transcription Enhancers Weak transcription Genic enhancers	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv834304	chr2:96493545-96667472	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:96493000-96506400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr2:96493200-96502000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr2:96494000-96503800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr2:96494000-96504600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr2:96494200-96502000	Weak transcription	Brain Substantia Nigra	brain
6	chr2:96494200-96502600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr2:96494200-96502600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr2:96494200-96503200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr2:96494200-96517600	Weak transcription	HUVEC	blood vessel
10	chr2:96494400-96506200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr2:96494600-96515800	Weak transcription	Fetal Brain Male	brain
12	chr2:96494800-96502000	Weak transcription	Primary B cells from peripheral blood	blood
13	chr2:96494800-96506200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr2:96495000-96523200	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr2:96495000-96532800	Weak transcription	HSMM	muscle
16	chr2:96495200-96501800	Weak transcription	Small Intestine	intestine
17	chr2:96495200-96502400	Weak transcription	Colon Smooth Muscle	Colon
18	chr2:96495400-96502400	Weak transcription	Duodenum Mucosa	Duodenum
19	chr2:96495600-96502800	Strong transcription	Thymus	Thymus
20	chr2:96495600-96504000	Weak transcription	HepG2	liver
21	chr2:96495600-96504200	Weak transcription	Right Ventricle	heart
22	chr2:96495600-96515800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr2:96495800-96503800	Weak transcription	Stomach Mucosa	stomach
24	chr2:96496000-96502800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr2:96496000-96502800	Strong transcription	Fetal Muscle Trunk	muscle
26	chr2:96496200-96502600	Weak transcription	Pancreas	Pancrea
27	chr2:96496400-96515600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr2:96496600-96505200	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr2:96496600-96521200	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr2:96496800-96504400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr2:96497000-96502800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr2:96497000-96504000	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr2:96497000-96515800	Weak transcription	Fetal Lung	lung
34	chr2:96497000-96515800	Weak transcription	NHEK	skin
35	chr2:96497400-96501800	Weak transcription	Brain Cingulate Gyrus	brain
36	chr2:96497400-96521200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr2:96497800-96502600	Strong transcription	Fetal Brain Female	brain
38	chr2:96497800-96503400	Strong transcription	Dnd41	blood
39	chr2:96497800-96504200	Weak transcription	NHLF	lung
40	chr2:96497800-96515800	Weak transcription	HSMMtube	muscle
41	chr2:96498000-96502800	Strong transcription	Ovary	ovary
42	chr2:96498600-96502800	Weak transcription	Placenta	Placenta
43	chr2:96498600-96503200	Strong transcription	Primary neutrophils fromperipheralblood	blood
44	chr2:96499000-96502800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr2:96499000-96502800	Strong transcription	Duodenum Smooth Muscle	Duodenum
46	chr2:96499000-96502800	Strong transcription	Fetal Muscle Leg	muscle
47	chr2:96499200-96502800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr2:96499200-96502800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
49	chr2:96499200-96502800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr2:96499200-96502800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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