Variant report

Variant	rs55695831
Chromosome Location	chr7:70006858-70006859
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11970842	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11971065	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11971835	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11972637	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11972765	0.85[ASN][1000 genomes]
rs11973010	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11976080	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11977788	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11978666	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11983481	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12698908	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13247777	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17141722	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17141728	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34127640	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34178123	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34535074	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34624532	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34822349	0.84[ASN][1000 genomes]
rs34884177	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35053417	0.84[ASN][1000 genomes]
rs35123577	0.84[ASN][1000 genomes]
rs35284096	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35614840	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35713975	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35886211	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35947731	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6980457	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71549358	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73704491	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv532783	chr7:69939570-70245396	Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3341834	chr7:69968031-70288098	Weak transcription ZNF genes & repeats Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv532784	chr7:69969631-70204548	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1025522	chr7:69971452-70173513	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69983800-70009400	Weak transcription	Primary B cells from peripheral blood	blood
2	chr7:69988800-70007600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr7:69995200-70007800	Weak transcription	Adipose Nuclei	Adipose
4	chr7:69995400-70012200	Weak transcription	Fetal Stomach	stomach
5	chr7:69995800-70007200	Weak transcription	HSMMtube	muscle
6	chr7:69996800-70017800	Weak transcription	Aorta	Aorta
7	chr7:69999000-70007400	Weak transcription	Brain Hippocampus Middle	brain
8	chr7:70000200-70015400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr7:70004000-70007800	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr7:70004200-70007400	Weak transcription	Psoas Muscle	Psoas
11	chr7:70004200-70009600	Enhancers	Fetal Muscle Leg	muscle
12	chr7:70004400-70008400	Weak transcription	Left Ventricle	heart
13	chr7:70005200-70007800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:70006000-70007600	Weak transcription	Brain Anterior Caudate	brain
15	chr7:70006000-70008800	Weak transcription	Fetal Brain Female	brain
16	chr7:70006000-70011600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr7:70006200-70008800	Enhancers	Fetal Heart	heart
18	chr7:70006600-70007800	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr7:70006600-70008800	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr7:70006800-70007400	Weak transcription	Right Ventricle	heart

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