Variant report

Variant	rs556958832
Chromosome Location	chr1:239887551-239887552
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv549435	chr1:239375010-239974006	Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3377526	chr1:239623743-240111639	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv873351	chr1:239636613-240324200	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	esv2757778	chr1:239766094-240389504	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	esv2759009	chr1:239766094-240389504	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	esv3363446	chr1:239887329-239890727	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:239875400-239890800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:239878200-239891000	Weak transcription	Fetal Intestine Small	intestine
3	chr1:239883400-239888200	Weak transcription	Pancreas	Pancrea
4	chr1:239885000-239894000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr1:239885400-239888000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr1:239885400-239888600	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr1:239885600-239887600	Enhancers	Dnd41	blood
8	chr1:239885600-239905600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr1:239885800-239888600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr1:239885800-239888600	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr1:239886000-239888200	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr1:239886000-239888200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr1:239886000-239888400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr1:239886200-239888800	Enhancers	Primary T cells from cord blood	blood
15	chr1:239886800-239908200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr1:239887000-239887600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
17	chr1:239887000-239888400	Enhancers	Primary T cells fromperipheralblood	blood
18	chr1:239887200-239887600	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr1:239887200-239888000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr1:239887200-239888600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr1:239887400-239887600	Enhancers	Thymus	Thymus
22	chr1:239887400-239887800	Weak transcription	Fetal Thymus	thymus
23	chr1:239887400-239888600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr1:239887400-239888800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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