Variant report

Variant	rs556962661
Chromosome Location	chr9:98329944-98329945
allele	-/TA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531633	chr9:98078300-98431120	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv831658	chr9:98152971-98342178	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv430083	chr9:98204245-98445645	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv1041997	chr9:98322355-98442175	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv540176	chr9:98322355-98442175	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	esv3390506	chr9:98328831-98332229	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98319600-98330000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:98319800-98330000	Weak transcription	Fetal Kidney	kidney
3	chr9:98329200-98330200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr9:98329200-98330200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr9:98329200-98330200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr9:98329200-98330400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:98329400-98330000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr9:98329600-98330000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr9:98329600-98330000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr9:98329600-98330000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr9:98329600-98330200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr9:98329600-98330200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr9:98329600-98332200	Weak transcription	Fetal Lung	lung
14	chr9:98329600-98332600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr9:98329800-98330000	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:98329800-98330200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
17	chr9:98329800-98330200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr9:98329800-98330200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr9:98329800-98330200	Enhancers	Gastric	stomach
20	chr9:98329800-98330800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr9:98329800-98330800	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
22	chr9:98329800-98331000	ZNF genes & repeats	Spleen	Spleen

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