The 2.0 version of rSNPBase

Variant report

Variant rs55698487
Chromosome Location chr12:31818151-31818152
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:58 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:31812800-31818200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
2 chr12:31812800-31819600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
3 chr12:31812800-31823800 Weak transcription Small Intestine intestine
4 chr12:31813000-31822000 Weak transcription Primary hematopoietic stem cells short term culture blood
5 chr12:31813000-31822000 Weak transcription NH-A brain
6 chr12:31813000-31826000 Weak transcription Gastric stomach
7 chr12:31813200-31818400 Weak transcription Esophagus oesophagus
8 chr12:31813200-31822000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
9 chr12:31813200-31837000 Weak transcription Fetal Brain Male brain
10 chr12:31813400-31818800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
11 chr12:31813400-31820600 Weak transcription HSMMtube muscle
12 chr12:31813400-31820800 Weak transcription Ovary ovary
13 chr12:31813400-31821600 Weak transcription Thymus Thymus
14 chr12:31813400-31821800 Weak transcription Primary T helper cells fromperipheralblood blood
15 chr12:31813400-31821800 Weak transcription Colon Smooth Muscle Colon
16 chr12:31813400-31821800 Weak transcription Duodenum Smooth Muscle Duodenum
17 chr12:31813400-31821800 Weak transcription Fetal Lung lung
18 chr12:31813400-31822000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
19 chr12:31813400-31822000 Weak transcription Brain Anterior Caudate brain
20 chr12:31813400-31822000 Weak transcription Fetal Intestine Large intestine
21 chr12:31813400-31822000 Weak transcription Psoas Muscle Psoas
22 chr12:31813400-31822000 Weak transcription Right Ventricle heart
23 chr12:31813400-31822200 Weak transcription Muscle Satellite Cultured Cells --
24 chr12:31813400-31822200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
25 chr12:31813400-31825200 Weak transcription Aorta Aorta
26 chr12:31813400-31825400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
27 chr12:31813400-31825600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
28 chr12:31813400-31826600 Weak transcription Brain Cingulate Gyrus brain
29 chr12:31813400-31835200 Weak transcription Brain Inferior Temporal Lobe brain
30 chr12:31813400-31835600 Weak transcription Brain Angular Gyrus brain
31 chr12:31813400-31836200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
32 chr12:31813600-31818200 Weak transcription Pancreatic Islets Pancreatic Islet
33 chr12:31813600-31821800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
34 chr12:31813800-31821800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
35 chr12:31814200-31821800 Weak transcription Brain Hippocampus Middle brain
36 chr12:31814200-31821800 Weak transcription Rectal Smooth Muscle rectum
37 chr12:31815200-31822000 Weak transcription Cortex derived primary cultured neurospheres brain
38 chr12:31815200-31840600 Weak transcription Pancreas Pancrea
39 chr12:31815400-31818200 Weak transcription Fetal Stomach stomach
40 chr12:31815400-31822200 Weak transcription Lung lung
41 chr12:31815600-31821800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
42 chr12:31815800-31826200 Weak transcription Brain Substantia Nigra brain
43 chr12:31816000-31821600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
44 chr12:31816000-31821800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
45 chr12:31816000-31821800 Weak transcription Adipose Nuclei Adipose
46 chr12:31816000-31822000 Weak transcription Fetal Muscle Trunk muscle
47 chr12:31816400-31822200 Weak transcription Left Ventricle heart
48 chr12:31816600-31818200 Weak transcription Breast Myoepithelial Primary Cells Breast
49 chr12:31816600-31820600 Weak transcription Stomach Smooth Muscle stomach
50 chr12:31816600-31821800 Weak transcription Fetal Muscle Leg muscle

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Last update: Aug 31, 2015