Variant report

Variant	rs557024139
Chromosome Location	chr15:33993568-33993569
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:121484531..121485045-chr15:33993204..33993823,2	MCF-7	breast:
2	chr15:33601386..33602463-chr15:33992935..33994146,8	MCF-7	breast:
3	chr15:33583780..33585600-chr15:33992062..33993955,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259446	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv524568	chr15:33993483-33997257	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33988800-34002600	Weak transcription	Aorta	Aorta
2	chr15:33989000-34001600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr15:33991600-33996800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr15:33992200-33993600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:33992800-33993600	Enhancers	NH-A	brain
6	chr15:33992800-33994000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr15:33993000-33994800	Strong transcription	Stomach Smooth Muscle	stomach
8	chr15:33993000-34001600	Weak transcription	Fetal Brain Female	brain
9	chr15:33993000-34034200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr15:33993000-34034600	Weak transcription	Colon Smooth Muscle	Colon
11	chr15:33993200-33993600	Enhancers	H1 Cell Line	embryonic stem cell
12	chr15:33993200-33993800	Enhancers	HepG2	liver
13	chr15:33993200-33994600	Strong transcription	Fetal Muscle Trunk	muscle
14	chr15:33993200-33994800	Weak transcription	Fetal Brain Male	brain
15	chr15:33993400-33993600	Strong transcription	Skeletal Muscle Male	skeletal muscle
16	chr15:33993400-33993800	Strong transcription	Fetal Muscle Leg	muscle
17	chr15:33993400-33994000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr15:33993400-33994200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr15:33993400-33994400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr15:33993400-33994400	Strong transcription	Brain Anterior Caudate	brain
21	chr15:33993400-34002600	Weak transcription	Brain Cingulate Gyrus	brain

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