Variant report

Variant	rs55703313
Chromosome Location	chr7:26627327-26627328
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12154305	0.83[EUR][1000 genomes]
rs55639061	0.83[EUR][1000 genomes]
rs55668747	0.83[EUR][1000 genomes]
rs55715725	0.83[EUR][1000 genomes]
rs55779830	0.83[EUR][1000 genomes]
rs55871610	0.83[EUR][1000 genomes]
rs55992393	0.83[EUR][1000 genomes]
rs56099614	0.83[EUR][1000 genomes]
rs56148050	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56158033	0.83[EUR][1000 genomes]
rs56171200	0.83[EUR][1000 genomes]
rs56408177	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
4	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
5	nsv830929	chr7:26587888-26749735	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26625400-26632200	Weak transcription	Fetal Brain Female	brain
2	chr7:26626400-26627800	Enhancers	Primary hematopoietic stem cells	blood
3	chr7:26626800-26627800	Enhancers	Primary B cells from peripheral blood	blood
4	chr7:26626800-26627800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr7:26626800-26628000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr7:26627000-26627400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr7:26627000-26628000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr7:26627200-26627800	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr7:26627200-26627800	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr7:26627200-26628000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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