Variant report

Variant	rs55704776
Chromosome Location	chr16:70688303-70688304
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:70611435..70614345-chr16:70688186..70690575,2	K562	blood:
2	chr16:70414237..70416453-chr16:70688010..70689674,2	MCF-7	breast:
3	chr16:70688085..70692168-chr16:70718317..70721459,4	MCF-7	breast:
4	chr16:70380612..70382422-chr16:70687697..70689426,2	MCF-7	breast:
5	chr16:70679648..70683567-chr16:70688197..70691172,3	K562	blood:
6	chr16:70555993..70558227-chr16:70687892..70690787,2	K562	blood:

Variant related genes	Relation type
ENSG00000157368	Chromatin interaction
ENSG00000168872	Chromatin interaction
ENSG00000132613	Chromatin interaction
ENSG00000189091	Chromatin interaction
ENSG00000103051	Chromatin interaction
ENSG00000261777	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517391	chr16:70666410-70840490	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv457517	chr16:70666722-70840490	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv572945	chr16:70666722-70840490	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv906874	chr16:70677785-70740707	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv906875	chr16:70677785-70742536	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv906876	chr16:70677785-70757555	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv906877	chr16:70677785-70766378	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
8	nsv906878	chr16:70677785-70782922	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
9	nsv906879	chr16:70677785-70790831	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
10	nsv906880	chr16:70677785-70796515	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
11	nsv906881	chr16:70688073-70700214	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70683600-70697200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr16:70683600-70698600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr16:70684200-70697400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr16:70685600-70693600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr16:70687400-70688400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr16:70687400-70688400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr16:70687400-70688600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr16:70687600-70688400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr16:70687600-70688400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr16:70687600-70688400	Enhancers	Fetal Heart	heart
11	chr16:70687600-70688400	Enhancers	Stomach Mucosa	stomach
12	chr16:70687800-70688400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr16:70687800-70688400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr16:70687800-70688400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
15	chr16:70687800-70688400	Enhancers	Primary hematopoietic stem cells	blood
16	chr16:70687800-70688400	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr16:70687800-70688400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr16:70687800-70688400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr16:70687800-70688400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr16:70687800-70688400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
21	chr16:70687800-70688400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr16:70687800-70688400	Flanking Active TSS	Adipose Nuclei	Adipose
23	chr16:70687800-70688400	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr16:70687800-70688400	Flanking Active TSS	Brain Substantia Nigra	brain
25	chr16:70687800-70688400	Flanking Active TSS	Duodenum Mucosa	Duodenum
26	chr16:70687800-70688400	Enhancers	Fetal Brain Male	brain
27	chr16:70687800-70688400	Enhancers	Placenta	Placenta
28	chr16:70687800-70688400	Enhancers	Ovary	ovary
29	chr16:70687800-70688400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
30	chr16:70687800-70688400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
31	chr16:70687800-70688400	Flanking Active TSS	A549	lung
32	chr16:70687800-70688400	Enhancers	Dnd41	blood
33	chr16:70687800-70688400	Flanking Active TSS	Osteobl	bone
34	chr16:70687800-70688600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr16:70687800-70688600	Enhancers	Liver	Liver
36	chr16:70687800-70688600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
37	chr16:70687800-70688600	Enhancers	Fetal Muscle Leg	muscle
38	chr16:70687800-70688600	Flanking Active TSS	Stomach Smooth Muscle	stomach
39	chr16:70687800-70688600	Enhancers	HSMMtube	muscle
40	chr16:70688000-70688400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr16:70688000-70688400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr16:70688000-70688400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr16:70688000-70688400	Flanking Active TSS	Colon Smooth Muscle	Colon
44	chr16:70688000-70688400	Enhancers	Psoas Muscle	Psoas
45	chr16:70688000-70688400	Genic enhancers	Spleen	Spleen
46	chr16:70688000-70688400	Flanking Active TSS	Hela-S3	cervix
47	chr16:70688000-70688400	Flanking Active TSS	HSMM	muscle
48	chr16:70688000-70688400	Flanking Active TSS	K562	blood
49	chr16:70688000-70688600	Enhancers	H1 Cell Line	embryonic stem cell
50	chr16:70688000-70688600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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