Variant report

Variant	rs557074769
Chromosome Location	chr13:30708167-30708168
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	13:30704196-30711562..13:30879528-30882380	H1-hESC	embryonic stem cell:	embryo
2	chr13:30698648..30700274-chr13:30705836..30708500,2	MCF-7	breast:
3	chr13:30707361..30710289-chr13:30714464..30717739,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000102781	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040215	chr13:30621351-30741022	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv541745	chr13:30621351-30741022	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv832572	chr13:30650005-30835256	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv981	chr13:30703159-30739838	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv1847946	chr13:30707385-30731192	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30700200-30717200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr13:30706400-30709400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr13:30706600-30708400	Enhancers	Fetal Thymus	thymus
4	chr13:30706600-30708800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr13:30706600-30708800	Enhancers	Stomach Mucosa	stomach
6	chr13:30706600-30709000	Enhancers	Brain Hippocampus Middle	brain
7	chr13:30706600-30709000	Enhancers	Brain Substantia Nigra	brain
8	chr13:30706600-30709200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr13:30706600-30709200	Enhancers	Fetal Intestine Small	intestine
10	chr13:30706800-30708600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr13:30706800-30708600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
12	chr13:30706800-30708600	Enhancers	Fetal Muscle Leg	muscle
13	chr13:30706800-30709600	Enhancers	Adipose Nuclei	Adipose
14	chr13:30707000-30708200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr13:30707000-30708800	Enhancers	HSMM	muscle
16	chr13:30707000-30708800	Enhancers	NHDF-Ad	bronchial
17	chr13:30707000-30709000	Enhancers	Muscle Satellite Cultured Cells	--
18	chr13:30707000-30709000	Enhancers	Fetal Intestine Large	intestine
19	chr13:30707000-30709200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr13:30707000-30709400	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr13:30707000-30709400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr13:30707000-30709400	Enhancers	Ovary	ovary
23	chr13:30707000-30709400	Enhancers	Osteobl	bone
24	chr13:30707000-30710000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr13:30707000-30710000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr13:30707200-30708200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr13:30707200-30708200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr13:30707200-30708200	Enhancers	Brain Anterior Caudate	brain
29	chr13:30707200-30708200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr13:30707200-30708400	Weak transcription	Colon Smooth Muscle	Colon
31	chr13:30707200-30708600	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr13:30707200-30708600	Enhancers	HSMMtube	muscle
33	chr13:30707200-30708800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr13:30707200-30708800	Enhancers	Brain Cingulate Gyrus	brain
35	chr13:30707200-30708800	Enhancers	Brain Inferior Temporal Lobe	brain
36	chr13:30707200-30709200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr13:30707200-30712200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr13:30707200-30712400	Weak transcription	Fetal Lung	lung
39	chr13:30707400-30708400	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr13:30707400-30709200	Enhancers	Stomach Smooth Muscle	stomach
41	chr13:30707400-30714400	Weak transcription	Spleen	Spleen
42	chr13:30707400-30714400	Weak transcription	GM12878-XiMat	blood
43	chr13:30707600-30708200	Weak transcription	Rectal Smooth Muscle	rectum
44	chr13:30707600-30708800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr13:30707600-30709000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr13:30707600-30712200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr13:30707800-30708600	Enhancers	NHLF	lung
48	chr13:30707800-30715200	Weak transcription	Dnd41	blood
49	chr13:30708000-30708400	Enhancers	HepG2	liver
50	chr13:30708000-30708600	Enhancers	NH-A	brain

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