Variant report

Variant	rs55707820
Chromosome Location	chr1:220081386-220081387
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12027044	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1498391	0.92[ASN][1000 genomes]
rs17006829	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59789715	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61462858	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6679410	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73097941	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006393	chr1:219925261-220126458	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1067840	chr1:219990803-220091941	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220077400-220086800	Weak transcription	Fetal Intestine Large	intestine
2	chr1:220077400-220088400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr1:220077400-220088600	Weak transcription	Fetal Intestine Small	intestine
4	chr1:220079600-220081400	Flanking Active TSS	K562	blood
5	chr1:220080200-220082200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr1:220080400-220081400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr1:220080400-220081600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr1:220080600-220081400	Enhancers	Liver	Liver
9	chr1:220080600-220082000	Enhancers	Primary hematopoietic stem cells	blood
10	chr1:220081200-220081800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr1:220081200-220082000	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr1:220081200-220088000	Weak transcription	HepG2	liver
13	chr1:220081200-220088600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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