Variant report

Variant	rs55708107
Chromosome Location	chr17:17200920-17200921
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:17184001..17186220-chr17:17199204..17203201,3	K562	blood:
2	chr17:17198944..17201755-chr17:17206593..17208190,2	K562	blood:

Variant related genes	Relation type
ENSG00000141030	Chromatin interaction
ENSG00000205309	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16961516	0.85[EUR][1000 genomes]
rs7211243	0.85[EUR][1000 genomes]
rs7219752	0.85[EUR][1000 genomes]
rs7226045	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833380	chr17:17088416-17241206	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1065811	chr17:17104760-17225204	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv833382	chr17:17124329-17305683	Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv469777	chr17:17127385-17272698	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv482546	chr17:17127385-17272698	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	esv33859	chr17:17189904-17208157	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
7	nsv1061186	chr17:17200427-17314406	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17199600-17201000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr17:17199600-17201000	Enhancers	NHLF	lung
3	chr17:17199600-17201200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr17:17199600-17202200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr17:17199600-17202200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr17:17199600-17202200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr17:17199600-17202200	Enhancers	Osteobl	bone
8	chr17:17199600-17202400	Enhancers	GM12878-XiMat	blood
9	chr17:17199800-17201000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr17:17199800-17201200	Enhancers	NHDF-Ad	bronchial
11	chr17:17199800-17203800	Weak transcription	Fetal Muscle Leg	muscle
12	chr17:17200000-17203400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr17:17200000-17203600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr17:17200000-17203600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr17:17200200-17201600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr17:17200400-17201400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr17:17200400-17203400	Weak transcription	A549	lung
18	chr17:17200400-17204200	Weak transcription	HMEC	breast
19	chr17:17200400-17206000	Weak transcription	NHEK	skin
20	chr17:17200600-17201200	Enhancers	Fetal Brain Male	brain
21	chr17:17200600-17201400	Enhancers	HSMM	muscle
22	chr17:17200600-17203600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr17:17200800-17201000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr17:17200800-17201200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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