Variant report

Variant	rs55708245
Chromosome Location	chr15:92546004-92546005
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17644210	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17695281	0.98[ASN][1000 genomes]
rs17695287	0.98[ASN][1000 genomes]
rs17695293	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv904498	chr15:92545284-92558234	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92498200-92555000	Weak transcription	Gastric	stomach
2	chr15:92527400-92551400	Weak transcription	Aorta	Aorta
3	chr15:92535600-92548000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr15:92536000-92547400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr15:92536400-92548600	Weak transcription	Esophagus	oesophagus
6	chr15:92537800-92547200	Weak transcription	Small Intestine	intestine
7	chr15:92538200-92554800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr15:92543000-92546800	Weak transcription	Psoas Muscle	Psoas
9	chr15:92543000-92552400	Weak transcription	Pancreas	Pancrea
10	chr15:92543600-92550800	Enhancers	Brain Substantia Nigra	brain
11	chr15:92544000-92547400	Enhancers	Right Ventricle	heart
12	chr15:92544200-92546600	Weak transcription	Brain Anterior Caudate	brain
13	chr15:92544200-92547000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr15:92544200-92547400	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr15:92544200-92554800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr15:92544400-92554800	Weak transcription	Primary hematopoietic stem cells	blood
17	chr15:92544600-92548600	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr15:92544800-92548200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr15:92544800-92548400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr15:92544800-92548400	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr15:92544800-92548600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr15:92544800-92548600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr15:92544800-92548600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr15:92544800-92551200	Weak transcription	Ovary	ovary
25	chr15:92544800-92552400	Weak transcription	Spleen	Spleen
26	chr15:92544800-92554200	Weak transcription	Fetal Brain Female	brain
27	chr15:92544800-92554800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr15:92545000-92546400	Weak transcription	Brain Cingulate Gyrus	brain
29	chr15:92545000-92546400	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr15:92545000-92548200	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr15:92545000-92548200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr15:92545000-92548400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr15:92545000-92548400	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr15:92545200-92546200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr15:92545200-92546800	Weak transcription	Fetal Brain Male	brain
36	chr15:92545400-92546800	Weak transcription	Brain Angular Gyrus	brain
37	chr15:92545400-92546800	Weak transcription	Brain Hippocampus Middle	brain
38	chr15:92545400-92547000	Weak transcription	Lung	lung
39	chr15:92545400-92554800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr15:92545600-92546600	Weak transcription	Left Ventricle	heart
41	chr15:92545600-92546800	Weak transcription	Right Atrium	heart
42	chr15:92545600-92548400	Enhancers	Fetal Heart	heart
43	chr15:92545600-92552400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr15:92546000-92547000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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