Variant report

Variant	rs55709272
Chromosome Location	chr2:113867288-113867289
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:113860907..113862793-chr2:113865698..113867345,2	K562	blood:
2	chr2:113863303..113865614-chr2:113866020..113867992,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136689	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10176274	0.95[ASN][1000 genomes]
rs10188292	0.95[ASN][1000 genomes]
rs12328368	0.95[ASN][1000 genomes]
rs12328766	0.95[ASN][1000 genomes]
rs12329129	0.95[ASN][1000 genomes]
rs13382561	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13398728	0.95[ASN][1000 genomes]
rs13409360	0.95[ASN][1000 genomes]
rs13409371	0.95[ASN][1000 genomes]
rs13410964	0.95[ASN][1000 genomes]
rs13424580	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1446509	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1446510	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17207494	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28648961	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4496335	0.95[ASN][1000 genomes]
rs55896126	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62158853	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62158854	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6722922	0.95[ASN][1000 genomes]
rs6730516	0.95[ASN][1000 genomes]
rs6734238	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6738239	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6741180	0.95[ASN][1000 genomes]
rs6743171	0.95[ASN][1000 genomes]
rs6746979	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6750559	0.95[ASN][1000 genomes]
rs7574159	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7574427	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7580634	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7587033	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7596350	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9973741	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997348	chr2:113688093-113986508	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1007254	chr2:113726982-113887782	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv535894	chr2:113726982-113887782	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv1003928	chr2:113846503-113887782	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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