Variant report

Variant	rs557105153
Chromosome Location	chr6:15662551-15662552
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15660394..15662870-chr6:15679792..15681475,2	K562	blood:
2	chr6:15661311..15664347-chr6:16127901..16131243,6	K562	blood:
3	chr6:15659552..15664792-chr6:16126837..16130644,6	MCF-7	breast:
4	chr1:153621962..153623668-chr6:15660534..15662735,2	MCF-7	breast:
5	chr6:15661088..15663422-chr6:16128985..16131574,3	K562	blood:
6	chr6:15655170..15659272-chr6:15659508..15662983,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2755670	chr6:15624762-15736008	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3373756	chr6:15661798-15664346	Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15661800-15662600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
2	chr6:15661800-15662600	Flanking Active TSS	Brain Hippocampus Middle	brain
3	chr6:15661800-15663400	Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr6:15661800-15663400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:15661800-15663600	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr6:15662000-15662600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
7	chr6:15662000-15662600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:15662000-15662600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:15662000-15662600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
10	chr6:15662000-15662600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
11	chr6:15662000-15662600	Flanking Active TSS	Primary B cells from peripheral blood	blood
12	chr6:15662000-15662600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
13	chr6:15662000-15662600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
14	chr6:15662000-15662600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr6:15662000-15662600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
16	chr6:15662000-15662600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:15662000-15662600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
18	chr6:15662000-15662600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:15662000-15662600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:15662000-15662600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:15662000-15662600	Flanking Active TSS	Adipose Nuclei	Adipose
22	chr6:15662000-15662600	Flanking Active TSS	Liver	Liver
23	chr6:15662000-15662600	Flanking Active TSS	Brain Cingulate Gyrus	brain
24	chr6:15662000-15662600	Flanking Active TSS	Fetal Lung	lung
25	chr6:15662000-15662600	Flanking Active TSS	Fetal Muscle Trunk	muscle
26	chr6:15662000-15662600	Flanking Active TSS	Fetal Muscle Leg	muscle
27	chr6:15662000-15662600	Flanking Active TSS	Fetal Thymus	thymus
28	chr6:15662000-15662600	Active TSS	Right Atrium	heart
29	chr6:15662000-15662600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
30	chr6:15662000-15662600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
31	chr6:15662000-15662600	Flanking Active TSS	Stomach Mucosa	stomach
32	chr6:15662000-15662600	Flanking Active TSS	Thymus	Thymus
33	chr6:15662000-15662600	Flanking Active TSS	Dnd41	blood
34	chr6:15662000-15662600	Flanking Active TSS	GM12878-XiMat	blood
35	chr6:15662000-15662600	Flanking Active TSS	HMEC	breast
36	chr6:15662000-15662600	Flanking Active TSS	HUVEC	blood vessel
37	chr6:15662000-15662600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
38	chr6:15662000-15662800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr6:15662000-15662800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr6:15662000-15663400	Active TSS	ES-I3 Cell Line	embryonic stem cell
41	chr6:15662000-15663400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
42	chr6:15662000-15663400	Active TSS	HUES6 Cell Line	embryonic stem cell
43	chr6:15662000-15663400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr6:15662000-15663400	Active TSS	Fetal Kidney	kidney
45	chr6:15662000-15663400	Active TSS	NHDF-Ad	bronchial
46	chr6:15662000-15663600	Active TSS	H9 Cell Line	embryonic stem cell
47	chr6:15662000-15663600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr6:15662000-15663600	Flanking Active TSS	Primary hematopoietic stem cells	blood
49	chr6:15662000-15663600	Active TSS	Muscle Satellite Cultured Cells	--
50	chr6:15662000-15663600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain

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