Variant report

Variant	rs55711438
Chromosome Location	chr14:69481594-69481595
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69444426..69446976-chr14:69479738..69482578,2	MCF-7	breast:
2	chr14:69480474..69483155-chr14:69487373..69489941,2	MCF-7	breast:
3	chr14:69444869..69447830-chr14:69479738..69482436,3	MCF-7	breast:
4	chr14:69472049..69474054-chr14:69481057..69482617,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000072110	Chromatin interaction
ENSG00000259062	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs72718228	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69473000-69482600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:69473000-69503600	Weak transcription	Right Atrium	heart
3	chr14:69473400-69481600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr14:69478400-69482000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr14:69479000-69482000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr14:69479200-69481800	Enhancers	Primary B cells from cord blood	blood
7	chr14:69479400-69482000	Enhancers	Fetal Intestine Small	intestine
8	chr14:69479600-69482000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr14:69479600-69482000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr14:69479600-69482000	Enhancers	Lung	lung
11	chr14:69480200-69482000	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr14:69480400-69481600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr14:69480400-69481600	Enhancers	Placenta	Placenta
14	chr14:69480400-69481600	Enhancers	A549	lung
15	chr14:69480400-69481800	Enhancers	H1 Cell Line	embryonic stem cell
16	chr14:69480400-69481800	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr14:69480400-69481800	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr14:69480400-69481800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr14:69480400-69481800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
20	chr14:69480400-69481800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr14:69480400-69481800	Enhancers	Fetal Intestine Large	intestine
22	chr14:69480400-69481800	Enhancers	Small Intestine	intestine
23	chr14:69480400-69482000	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr14:69480400-69482000	Enhancers	Fetal Lung	lung
25	chr14:69480400-69482000	Enhancers	HUVEC	blood vessel
26	chr14:69480600-69481600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
27	chr14:69480600-69481800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr14:69480600-69481800	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr14:69480600-69481800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr14:69480600-69481800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr14:69480600-69481800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr14:69480600-69481800	Enhancers	Rectal Mucosa Donor 29	rectum
33	chr14:69480600-69481800	Flanking Active TSS	HepG2	liver
34	chr14:69480600-69482000	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr14:69480600-69482000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr14:69480600-69482000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr14:69480600-69482000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr14:69480600-69482000	Enhancers	Rectal Mucosa Donor 31	rectum
39	chr14:69480600-69482000	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr14:69480800-69481600	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr14:69480800-69481600	Enhancers	Duodenum Mucosa	Duodenum
42	chr14:69480800-69481600	Enhancers	Hela-S3	cervix
43	chr14:69480800-69481800	Enhancers	Colonic Mucosa	Colon
44	chr14:69480800-69482000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr14:69480800-69482000	Enhancers	H9 Cell Line	embryonic stem cell
46	chr14:69480800-69482000	Enhancers	Osteobl	bone
47	chr14:69481000-69481800	Enhancers	Esophagus	oesophagus
48	chr14:69481000-69482000	Enhancers	Pancreas	Pancrea
49	chr14:69481000-69482000	Enhancers	NH-A	brain
50	chr14:69481000-69486000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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