Variant report

Variant	rs557120412
Chromosome Location	chr16:65072123-65072124
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948640	chr16:64859061-65112790	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv833260	chr16:65050647-65218759	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1831	chr16:65071976-65106105	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:65039000-65089600	Weak transcription	Fetal Intestine Large	intestine
2	chr16:65039600-65079800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr16:65040600-65086000	Weak transcription	HMEC	breast
4	chr16:65041200-65072400	Weak transcription	Fetal Kidney	kidney
5	chr16:65046400-65075600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr16:65047200-65078400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr16:65056800-65072800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr16:65058600-65104400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr16:65059800-65078400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr16:65062400-65074800	Weak transcription	Aorta	Aorta
11	chr16:65065800-65074800	Weak transcription	NHDF-Ad	bronchial
12	chr16:65066200-65074800	Weak transcription	HSMM	muscle
13	chr16:65066800-65076800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr16:65066800-65078400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr16:65068200-65073000	Strong transcription	Osteobl	bone
16	chr16:65069200-65072800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr16:65069200-65075200	Weak transcription	HSMMtube	muscle
18	chr16:65069800-65105000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr16:65070000-65072600	Enhancers	Brain Angular Gyrus	brain
20	chr16:65070000-65073000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr16:65070200-65072200	Strong transcription	NH-A	brain
22	chr16:65070600-65075000	Weak transcription	Ovary	ovary
23	chr16:65070800-65073000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr16:65071200-65072200	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr16:65071200-65072400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr16:65071400-65072400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr16:65071400-65072600	Enhancers	Brain Germinal Matrix	brain
28	chr16:65071400-65072600	Genic enhancers	Fetal Lung	lung
29	chr16:65071400-65072800	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr16:65071400-65072800	Enhancers	Fetal Brain Male	brain
31	chr16:65071400-65075000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr16:65071600-65072200	Enhancers	Fetal Muscle Leg	muscle
33	chr16:65071600-65072400	Enhancers	H1 Cell Line	embryonic stem cell
34	chr16:65071600-65072400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr16:65071600-65072600	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr16:65071600-65072600	Weak transcription	Spleen	Spleen
37	chr16:65071600-65072800	Enhancers	Duodenum Smooth Muscle	Duodenum
38	chr16:65071800-65072200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr16:65071800-65072400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr16:65071800-65072400	Active TSS	Brain Substantia Nigra	brain
41	chr16:65071800-65072600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr16:65071800-65072800	Enhancers	Fetal Brain Female	brain
43	chr16:65071800-65072800	Enhancers	Fetal Stomach	stomach
44	chr16:65071800-65073200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr16:65071800-65077400	Weak transcription	NHLF	lung
46	chr16:65072000-65072200	Enhancers	iPS-20b Cell Line	embryonic stem cell
47	chr16:65072000-65072200	Flanking Active TSS	Brain Hippocampus Middle	brain
48	chr16:65072000-65072400	Flanking Active TSS	Brain Anterior Caudate	brain
49	chr16:65072000-65072400	Flanking Active TSS	Brain Cingulate Gyrus	brain
50	chr16:65072000-65072400	Flanking Active TSS	Stomach Smooth Muscle	stomach

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