Variant report

Variant	rs55712839
Chromosome Location	chr3:60978160-60978161
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs55758138	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56080306	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6782531	0.85[EUR][1000 genomes]
rs73104216	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73104218	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73104223	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9819332	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534038	chr3:60781917-60993082	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2757872	chr3:60781943-61019003	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2759152	chr3:60781943-61220809	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2752012	chr3:60952040-61016039	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv590409	chr3:60952040-61040860	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv876864	chr3:60952040-61103609	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv915904	chr3:60952040-61125194	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1012510	chr3:60952040-61131709	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv536578	chr3:60952040-61131709	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60964200-60979400	Weak transcription	Psoas Muscle	Psoas
2	chr3:60974400-60978200	Weak transcription	Left Ventricle	heart
3	chr3:60975000-60978400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:60975800-60983200	Weak transcription	Spleen	Spleen
5	chr3:60976000-60978200	Weak transcription	Pancreas	Pancrea
6	chr3:60976000-60981200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr3:60976800-60979600	Enhancers	Fetal Heart	heart
8	chr3:60977400-60978800	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr3:60977600-60978600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr3:60977600-60978800	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr3:60977600-60978800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr3:60977800-60978600	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr3:60977800-60978800	Enhancers	Primary hematopoietic stem cells	blood
14	chr3:60977800-60979200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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