Variant report

Variant	rs557133889
Chromosome Location	chr1:70381492-70381493
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428466	chr1:70306638-70455357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv947491	chr1:70377933-70382966	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3382626	chr1:70380565-70383248	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3413294	chr1:70380914-70383012	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3452085	chr1:70381478-70382052	Flanking Active TSS Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70379200-70381600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr1:70379200-70381600	Enhancers	Fetal Lung	lung
3	chr1:70379400-70381600	Enhancers	HSMMtube	muscle
4	chr1:70379400-70381600	Enhancers	Osteobl	bone
5	chr1:70379800-70381600	Enhancers	Hela-S3	cervix
6	chr1:70380000-70381600	Enhancers	NHLF	lung
7	chr1:70380200-70381600	Enhancers	HSMM	muscle
8	chr1:70380400-70381600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:70380600-70381600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr1:70380600-70381600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:70380800-70381600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:70381000-70381600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr1:70381200-70381600	Flanking Active TSS	HUVEC	blood vessel
14	chr1:70381200-70381600	Enhancers	NHDF-Ad	bronchial
15	chr1:70381200-70387000	Weak transcription	Brain Angular Gyrus	brain
16	chr1:70381400-70381600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links