Variant report

Variant	rs55714084
Chromosome Location	chr7:21939089-21939090
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:21938917..21941313-chr7:21945922..21947681,2	K562	blood:
2	chr7:21938160..21940188-chr7:21943715..21946302,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164649	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs4487645	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56249828	0.85[EUR][1000 genomes]
rs56333627	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57104699	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6948632	0.89[EUR][1000 genomes]
rs7785157	0.92[EUR][1000 genomes]
rs7971	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv1027453	chr7:21918474-21982448	Enhancers Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21910000-21939400	Weak transcription	Left Ventricle	heart
2	chr7:21924400-21945400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:21926600-21942600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr7:21926800-21939200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr7:21927800-21940200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:21928000-21942600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:21928200-21939600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:21931000-21942400	Weak transcription	Fetal Kidney	kidney
9	chr7:21932600-21942000	Weak transcription	Brain Germinal Matrix	brain
10	chr7:21932600-21951000	Weak transcription	HSMM	muscle
11	chr7:21933000-21963200	Weak transcription	A549	lung
12	chr7:21934000-21950400	Strong transcription	Cortex derived primary cultured neurospheres	brain
13	chr7:21934200-21951600	Weak transcription	Fetal Brain Male	brain
14	chr7:21935200-21942200	Weak transcription	HMEC	breast
15	chr7:21936400-21942400	Weak transcription	NH-A	brain
16	chr7:21936600-21942000	Weak transcription	HSMMtube	muscle
17	chr7:21936600-21956400	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr7:21936600-21956600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr7:21936800-21945200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr7:21936800-21945200	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr7:21937000-21942200	Weak transcription	Brain Angular Gyrus	brain
22	chr7:21937000-21952200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr7:21937000-21956400	Strong transcription	HUES48 Cell Line	embryonic stem cell
24	chr7:21937200-21939800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr7:21937200-21956600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
26	chr7:21937400-21940800	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr7:21937400-21950800	Weak transcription	Right Atrium	heart
28	chr7:21937400-21956000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr7:21937600-21940400	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr7:21937600-21940800	Strong transcription	Muscle Satellite Cultured Cells	--
31	chr7:21937600-21941800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr7:21937600-21942400	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr7:21937600-21952000	Weak transcription	Psoas Muscle	Psoas
34	chr7:21937600-21952800	Strong transcription	Thymus	Thymus
35	chr7:21937600-21956200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr7:21937600-21956400	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr7:21937800-21939200	Enhancers	Fetal Heart	heart
38	chr7:21937800-21939400	Weak transcription	Osteobl	bone
39	chr7:21937800-21940800	Weak transcription	Liver	Liver
40	chr7:21937800-21947800	Strong transcription	NHEK	skin
41	chr7:21937800-21950200	Strong transcription	Fetal Muscle Trunk	muscle
42	chr7:21937800-21950600	Strong transcription	Fetal Stomach	stomach
43	chr7:21937800-21954000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr7:21937800-21956000	Strong transcription	H1 Cell Line	embryonic stem cell
45	chr7:21937800-21956200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr7:21938000-21940600	Weak transcription	Colon Smooth Muscle	Colon
47	chr7:21938000-21941000	Strong transcription	Pancreas	Pancrea
48	chr7:21938000-21941400	Strong transcription	Fetal Lung	lung
49	chr7:21938000-21942000	Strong transcription	HUVEC	blood vessel
50	chr7:21938000-21942200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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