Variant report

Variant	rs557142505
Chromosome Location	chr1:221052314-221052315
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr1:221052280-221052430	HFF-Myc	foreskin:	n/a	chr1:221052346-221052359 chr1:221052346-221052359
2	POLR2A	chr1:221052170-221053672	HEK293	kidney:	n/a	n/a
3	WRNIP1	chr1:221052262-221052420	GM12878	blood:	n/a	n/a
4	CTCF	chr1:221052260-221052410	GM12873	blood:	n/a	chr1:221052346-221052359 chr1:221052346-221052359
5	CTCF	chr1:221052180-221052330	AG09309	skin:	n/a	n/a
6	CTCF	chr1:221052280-221052430	AG10803	skin:	n/a	chr1:221052346-221052359 chr1:221052346-221052359
7	ZNF143	chr1:221052155-221052746	GM12878	blood:	n/a	n/a
8	CTCF	chr1:221052312-221052380	Fibrobl	skin:	n/a	chr1:221052346-221052359 chr1:221052346-221052359
9	MAX	chr1:221052274-221053740	HCT-116	colon:	n/a	chr1:221052899-221052909 chr1:221052464-221052473 chr1:221052603-221052613
10	REST	chr1:221051646-221052821	HL-60	blood:	n/a	chr1:221051972-221051985 chr1:221052190-221052204
11	CTCF	chr1:221052300-221052450	A549	lung:	n/a	chr1:221052346-221052359 chr1:221052346-221052359
12	CTBP2	chr1:221049806-221056533	H1-hESC	embryonic stem cell:	n/a	n/a
13	POLR2A	chr1:221049750-221054006	HL-60	blood:	n/a	n/a
14	POLR2A	chr1:221052138-221055250	IMR90	lung:	n/a	n/a
15	MAX	chr1:221052250-221053062	GM12878	blood:	n/a	chr1:221052899-221052909 chr1:221052464-221052473 chr1:221052603-221052613
16	CTCF	chr1:221052240-221052390	BE2_C	brain:	n/a	chr1:221052346-221052359 chr1:221052346-221052359
17	MAX	chr1:221052017-221053811	A549	lung:	n/a	chr1:221052899-221052909 chr1:221052464-221052473 chr1:221052603-221052613
18	E2F6	chr1:221052250-221053818	K562	blood:	n/a	chr1:221052962-221052971 chr1:221052900-221052909 chr1:221052955-221052965 chr1:221053102-221053112 chr1:221052320-221052331
19	MYC	chr1:221051657-221053132	NB4	blood:	n/a	chr1:221052899-221052909 chr1:221052464-221052473 chr1:221051894-221051909 chr1:221052603-221052613
20	CTCF	chr1:221052300-221052450	HCFaa	heart:	n/a	chr1:221052346-221052359 chr1:221052346-221052359
21	CTCF	chr1:221052280-221052430	HPAF	blood vessel:	n/a	chr1:221052346-221052359 chr1:221052346-221052359
22	CTCF	chr1:221052240-221052390	AG04449	skin:	n/a	chr1:221052346-221052359 chr1:221052346-221052359
23	SUZ12	chr1:221048843-221052557	NT2-D1	testis:	n/a	n/a
24	CTCF	chr1:221052301-221052354	GM12892	blood:	n/a	n/a
25	POLR2A	chr1:221050359-221052771	H1-neurons	neurons:	n/a	n/a
26	RCOR1	chr1:221052306-221052643	GM12878	blood:	n/a	n/a
27	CTCF	chr1:221052260-221052410	GM12871	blood:	n/a	chr1:221052346-221052359 chr1:221052346-221052359
28	CTCF	chr1:221052280-221052430	HEK293	kidney:	n/a	chr1:221052346-221052359 chr1:221052346-221052359
29	MAZ	chr1:221051935-221057120	IMR90	lung:	n/a	chr1:221052899-221052909 chr1:221052464-221052473 chr1:221052603-221052613
30	BACH1	chr1:221052129-221052743	H1-hESC	embryonic stem cell:	n/a	n/a
31	MAX	chr1:221052304-221052761	ECC-1	luminal epithelium:	n/a	chr1:221052464-221052473 chr1:221052603-221052613
32	CTCF	chr1:221052300-221052450	AG09319	gingival:	n/a	chr1:221052346-221052359 chr1:221052346-221052359
33	CTCF	chr1:221052234-221052525	GM12878	blood:	n/a	chr1:221052346-221052359 chr1:221052346-221052359
34	POLR2A	chr1:221051778-221053514	NB4	blood:	n/a	n/a
35	CTCF	chr1:221052311-221052363	A549	lung:	n/a	chr1:221052346-221052359 chr1:221052346-221052359
36	CTCF	chr1:221052180-221052330	HMF	breast:	n/a	n/a
37	MXI1	chr1:221051833-221056348	IMR90	lung:	n/a	chr1:221051897-221051906
38	HCFC1	chr1:221052268-221053758	Hela-S3	cervix:	n/a	n/a
39	CTCF	chr1:221052240-221052390	WERI-Rb-1	eye:	n/a	chr1:221052346-221052359 chr1:221052346-221052359
40	MXI1	chr1:221052291-221052757	GM12878	blood:	n/a	n/a
41	CTCF	chr1:221052300-221052450	HRE	kidney:	n/a	chr1:221052346-221052359 chr1:221052346-221052359
42	CTCF	chr1:221052180-221052330	HFF-Myc	foreskin:	n/a	n/a
43	MAX	chr1:221052216-221053693	K562	blood:	n/a	chr1:221052899-221052909 chr1:221052464-221052473 chr1:221052603-221052613
44	CTCF	chr1:221052280-221052430	BJ	skin:	n/a	chr1:221052346-221052359 chr1:221052346-221052359
45	CTCF	chr1:221052240-221052390	HUVEC	blood vessel:	n/a	chr1:221052346-221052359 chr1:221052346-221052359
46	SUZ12	chr1:221051729-221052684	H1-hESC	embryonic stem cell:	n/a	n/a
47	POLR2A	chr1:221052017-221052991	PFSK-1	brain:	n/a	n/a
48	POLR2A	chr1:221047152-221053823	HUVEC	blood vessel:	n/a	n/a
49	MYC	chr1:221052272-221053152	A549	lung:	n/a	chr1:221052899-221052909 chr1:221052464-221052473 chr1:221052603-221052613
50	CTCF	chr1:221052240-221052390	HMF	breast:	n/a	chr1:221052346-221052359 chr1:221052346-221052359

Variant related genes	Relation type
HLX	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	esv1798350	chr1:221020278-221069740	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3393770	chr1:221051854-221054702	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221049000-221053800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr1:221049400-221052600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr1:221049600-221052600	Flanking Active TSS	Primary hematopoietic stem cells	blood
4	chr1:221049600-221052800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr1:221049600-221052800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr1:221049600-221055600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:221049800-221052600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
8	chr1:221049800-221055400	Active TSS	Right Atrium	heart
9	chr1:221049800-221055800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
10	chr1:221050000-221055400	Active TSS	Left Ventricle	heart
11	chr1:221050200-221053800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
12	chr1:221050400-221053600	Bivalent Enhancer	Fetal Brain Male	brain
13	chr1:221050400-221055200	Flanking Active TSS	Primary B cells from cord blood	blood
14	chr1:221050600-221052600	Enhancers	Spleen	Spleen
15	chr1:221050800-221052600	Flanking Active TSS	Adipose Nuclei	Adipose
16	chr1:221051200-221052400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr1:221051200-221052600	Bivalent/Poised TSS	Brain Anterior Caudate	brain
18	chr1:221051200-221053800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
19	chr1:221051200-221054400	Active TSS	Lung	lung
20	chr1:221051200-221055000	Active TSS	Rectal Smooth Muscle	rectum
21	chr1:221051200-221055600	Active TSS	Right Ventricle	heart
22	chr1:221051400-221052800	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
23	chr1:221051400-221054000	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
24	chr1:221051400-221056000	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
25	chr1:221051600-221052400	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
26	chr1:221051600-221052600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
27	chr1:221051600-221052800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
28	chr1:221051600-221054400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr1:221051600-221054600	Active TSS	Colon Smooth Muscle	Colon
30	chr1:221051800-221052400	Flanking Active TSS	Liver	Liver
31	chr1:221051800-221052400	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 29	rectum
32	chr1:221051800-221052400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
33	chr1:221051800-221052600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
34	chr1:221051800-221052600	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr1:221051800-221052600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
36	chr1:221051800-221052600	Flanking Bivalent TSS/Enh	Placenta	Placenta
37	chr1:221051800-221052600	Flanking Active TSS	Pancreas	Pancrea
38	chr1:221051800-221052600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
39	chr1:221051800-221052600	Flanking Active TSS	HUVEC	blood vessel
40	chr1:221051800-221052800	Flanking Bivalent TSS/Enh	Primary Natural Killer cells fromperipheralblood	blood
41	chr1:221051800-221052800	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
42	chr1:221051800-221052800	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
43	chr1:221051800-221053200	Bivalent/Poised TSS	Sigmoid Colon	Sigmoid Colon
44	chr1:221051800-221053400	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
45	chr1:221051800-221053600	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
46	chr1:221051800-221053800	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
47	chr1:221051800-221054000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
48	chr1:221051800-221054200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr1:221051800-221054200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr1:221051800-221054200	Bivalent/Poised TSS	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links