The 2.0 version of rSNPBase

Variant report

Variant rs557145515
Chromosome Location chr6:145947408-145947409
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:56 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:145924400-145948200 Weak transcription Left Ventricle heart
2 chr6:145934200-145948000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
3 chr6:145937600-145952000 Weak transcription Psoas Muscle Psoas
4 chr6:145939800-145948400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
5 chr6:145941600-145954200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
6 chr6:145942400-145955400 Weak transcription Esophagus oesophagus
7 chr6:145943200-145947800 Weak transcription Skeletal Muscle Male skeletal muscle
8 chr6:145943200-145948200 Weak transcription Fetal Stomach stomach
9 chr6:145943200-145948200 Weak transcription Pancreas Pancrea
10 chr6:145943600-145947600 Weak transcription Primary B cells from peripheral blood blood
11 chr6:145943600-145948400 Weak transcription Brain Hippocampus Middle brain
12 chr6:145943800-145948200 Weak transcription Right Ventricle heart
13 chr6:145944200-145949800 Weak transcription GM12878-XiMat blood
14 chr6:145944400-145948000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
15 chr6:145945000-145948200 Weak transcription Aorta Aorta
16 chr6:145945200-145950200 Weak transcription Primary B cells from cord blood blood
17 chr6:145945200-145955400 Weak transcription Fetal Muscle Leg muscle
18 chr6:145945400-145948200 Weak transcription Thymus Thymus
19 chr6:145945400-145949000 Enhancers Primary neutrophils fromperipheralblood blood
20 chr6:145945600-145947800 Weak transcription Brain Anterior Caudate brain
21 chr6:145945600-145948000 Weak transcription Brain Substantia Nigra brain
22 chr6:145945600-145948000 Weak transcription Skeletal Muscle Female skeletal muscle
23 chr6:145945800-145955000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
24 chr6:145946000-145948200 Weak transcription Brain Inferior Temporal Lobe brain
25 chr6:145946000-145948200 Weak transcription Stomach Smooth Muscle stomach
26 chr6:145946000-145949600 Weak transcription Liver Liver
27 chr6:145946000-145951600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
28 chr6:145946200-145947800 Weak transcription Duodenum Smooth Muscle Duodenum
29 chr6:145946200-145948000 Weak transcription Primary hematopoietic stem cells short term culture blood
30 chr6:145946200-145948000 Weak transcription Sigmoid Colon Sigmoid Colon
31 chr6:145946200-145955000 Weak transcription Stomach Mucosa stomach
32 chr6:145946400-145948000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
33 chr6:145946400-145948000 Weak transcription Ovary ovary
34 chr6:145946400-145948200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
35 chr6:145946400-145948200 Weak transcription Fetal Intestine Small intestine
36 chr6:145946400-145950400 Weak transcription Primary hematopoietic stem cells blood
37 chr6:145946400-145950400 Weak transcription Rectal Mucosa Donor 31 rectum
38 chr6:145946400-145955600 Weak transcription Colon Smooth Muscle Colon
39 chr6:145946600-145948000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
40 chr6:145946600-145948200 Weak transcription Primary T helper naive cells fromperipheralblood blood
41 chr6:145946600-145949800 Weak transcription Spleen Spleen
42 chr6:145946800-145948200 Weak transcription Fetal Thymus thymus
43 chr6:145946800-145948800 Strong transcription Breast Myoepithelial Primary Cells Breast
44 chr6:145946800-145950600 Weak transcription Cortex derived primary cultured neurospheres brain
45 chr6:145946800-145950600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
46 chr6:145946800-145950800 Weak transcription Brain Cingulate Gyrus brain
47 chr6:145946800-145952400 Weak transcription Fetal Brain Female brain
48 chr6:145946800-145955400 Weak transcription Primary T helper cells fromperipheralblood blood
49 chr6:145947000-145948000 Weak transcription Adipose Nuclei Adipose
50 chr6:145947000-145955400 Weak transcription Primary T helper cells PMA-I stimulated --

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Last update: Aug 31, 2015