Variant report

Variant	rs55715457
Chromosome Location	chr9:94908350-94908351
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr9:94908301-94908499	K562	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:94902223..94905302-chr9:94908199..94910430,4	MCF-7	breast:
2	chr9:94907081..94909170-chr9:94913018..94916076,3	MCF-7	breast:
3	chr9:94907173..94909059-chr9:95054876..95056486,2	MCF-7	breast:
4	chr9:94907697..94909675-chr9:94998713..95001365,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SPTLC1-4	chr9:94908151-94908605	NONHSAT133172

No data

Variant related genes	Relation type
ENSG00000238996	TF binding region
LINC00475	TF binding region
ENSG00000225511	Chromatin interaction
ENSG00000196305	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10820943	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs68017831	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7044976	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv1046733	chr9:94690622-95138564	Genic enhancers Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv530947	chr9:94697309-95093377	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv917089	chr9:94857047-95099848	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	nsv969760	chr9:94877924-94966209	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv893572	chr9:94891778-94944778	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94903400-94908800	Weak transcription	K562	blood
2	chr9:94904000-94908800	Weak transcription	HMEC	breast
3	chr9:94904000-94909400	Weak transcription	Right Atrium	heart
4	chr9:94904200-94908600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr9:94904200-94908600	Weak transcription	Ovary	ovary
6	chr9:94904200-94908800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr9:94904200-94909000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr9:94904200-94909000	Weak transcription	Gastric	stomach
9	chr9:94904400-94908400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:94904400-94908800	Weak transcription	NH-A	brain
11	chr9:94904800-94908600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr9:94904800-94908800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr9:94905000-94908400	Weak transcription	Fetal Stomach	stomach
14	chr9:94905000-94908400	Weak transcription	NHLF	lung
15	chr9:94905000-94908400	Weak transcription	Osteobl	bone
16	chr9:94905000-94908600	Weak transcription	HSMMtube	muscle
17	chr9:94905200-94908600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr9:94905400-94908800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr9:94906800-94911200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr9:94907200-94908400	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr9:94907800-94908800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr9:94907800-94910400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr9:94908000-94910000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr9:94908200-94908800	Enhancers	HSMM	muscle
25	chr9:94908200-94909400	Enhancers	Muscle Satellite Cultured Cells	--
26	chr9:94908200-94910400	Enhancers	HUVEC	blood vessel

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