Variant report

Variant	rs55716188
Chromosome Location	chr20:11227112-11227113
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73082474	0.91[EUR][1000 genomes]
rs73086421	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv585415	chr20:11134907-11383327	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11216200-11228400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr20:11216200-11238800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr20:11225400-11231000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr20:11226000-11228200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr20:11226000-11228600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr20:11226400-11227400	Enhancers	Primary hematopoietic stem cells	blood
7	chr20:11226600-11229400	Enhancers	Brain Germinal Matrix	brain
8	chr20:11226800-11227400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr20:11226800-11227400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr20:11226800-11227400	Enhancers	HUVEC	blood vessel
11	chr20:11226800-11227600	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr20:11226800-11227600	Enhancers	HepG2	liver
13	chr20:11227000-11227200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
14	chr20:11227000-11228800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr20:11227000-11229400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr20:11227000-11230800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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