Variant report

Variant	rs557204090
Chromosome Location	chr10:92618235-92618236
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:92618156-92618520	HCT-116	colon:	n/a	n/a
2	POLR2A	chr10:92617871-92618257	U87	brain:	n/a	n/a
3	CTCF	chr10:92618120-92618270	AG10803	skin:	n/a	n/a
4	SIN3A	chr10:92615640-92618428	H1-hESC	embryonic stem cell:	n/a	chr10:92617442-92617455 chr10:92617619-92617630
5	CEBPB	chr10:92617942-92618348	ECC-1	luminal epithelium:	n/a	chr10:92618156-92618165 chr10:92618154-92618167 chr10:92618156-92618165 chr10:92618156-92618165
6	CEBPB	chr10:92618021-92618329	K562	blood:	n/a	chr10:92618156-92618165 chr10:92618154-92618167 chr10:92618156-92618165 chr10:92618156-92618165
7	CTCF	chr10:92617204-92618328	A549	lung:	n/a	chr10:92617551-92617564 chr10:92617645-92617658 chr10:92617548-92617566 chr10:92617549-92617565 chr10:92617601-92617614
8	RCOR1	chr10:92618144-92618341	K562	blood:	n/a	n/a
9	CTCF	chr10:92618100-92618250	HPF	lung:	n/a	n/a
10	HA-E2F1	chr10:92617853-92618376	MCF-7	breast:	n/a	chr10:92617951-92617960
11	SPI1	chr10:92618178-92618459	HL-60	blood:	n/a	chr10:92618252-92618265 chr10:92618251-92618264 chr10:92618340-92618347
12	CEBPB	chr10:92617873-92618405	A549	lung:	n/a	chr10:92618156-92618165 chr10:92618154-92618167 chr10:92618156-92618165 chr10:92618156-92618165
13	CEBPB	chr10:92617968-92618348	H1-hESC	embryonic stem cell:	n/a	chr10:92618156-92618165 chr10:92618154-92618167 chr10:92618156-92618165 chr10:92618156-92618165
14	CEBPB	chr10:92617975-92618349	MCF-7	breast:	n/a	chr10:92618156-92618165 chr10:92618154-92618167 chr10:92618156-92618165 chr10:92618156-92618165
15	CEBPB	chr10:92617998-92618357	A549	lung:	n/a	chr10:92618156-92618165 chr10:92618154-92618167 chr10:92618156-92618165 chr10:92618156-92618165
16	CEBPB	chr10:92618002-92618341	MCF-7	breast:	n/a	chr10:92618156-92618165 chr10:92618154-92618167 chr10:92618156-92618165 chr10:92618156-92618165
17	JUN	chr10:92618176-92618430	H1-hESC	embryonic stem cell:	n/a	n/a
18	FOS	chr10:92618116-92618292	MCF10A-Er-Src	breast:	n/a	n/a
19	EP300	chr10:92617466-92618260	ECC-1	luminal epithelium:	n/a	chr10:92617742-92617758 chr10:92617970-92617979
20	CEBPB	chr10:92618057-92618317	HepG2	liver:	n/a	chr10:92618156-92618165 chr10:92618154-92618167 chr10:92618156-92618165 chr10:92618156-92618165
21	MAZ	chr10:92618211-92618277	K562	blood:	n/a	n/a
22	SP1	chr10:92617856-92618255	H1-hESC	embryonic stem cell:	n/a	chr10:92617969-92617981 chr10:92617969-92617981
23	CEBPB	chr10:92617987-92618319	A549	lung:	n/a	chr10:92618156-92618165 chr10:92618154-92618167 chr10:92618156-92618165 chr10:92618156-92618165
24	ZNF384	chr10:92618142-92618262	GM12878	blood:	n/a	n/a
25	POLR2A	chr10:92618052-92618484	H1-neurons	neurons:	n/a	n/a
26	POLR2A	chr10:92618065-92618453	H1-neurons	neurons:	n/a	n/a
27	POLR2A	chr10:92617387-92618605	MCF10A-Er-Src	breast:	n/a	n/a
28	RCOR1	chr10:92618146-92618276	GM12878	blood:	n/a	n/a
29	ZBTB7A	chr10:92617395-92618337	ECC-1	luminal epithelium:	n/a	n/a
30	CEBPB	chr10:92617982-92618322	Hela-S3	cervix:	n/a	chr10:92618156-92618165 chr10:92618154-92618167 chr10:92618156-92618165 chr10:92618156-92618165
31	CEBPB	chr10:92618031-92618378	ECC-1	luminal epithelium:	n/a	chr10:92618156-92618165 chr10:92618154-92618167 chr10:92618156-92618165 chr10:92618156-92618165
32	FOS	chr10:92618055-92618236	MCF10A-Er-Src	breast:	n/a	n/a
33	CEBPB	chr10:92617970-92618334	IMR90	lung:	n/a	chr10:92618156-92618165 chr10:92618154-92618167 chr10:92618156-92618165 chr10:92618156-92618165

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92618080..92620435-chr10:92621216..92622913,2	K562	blood:
2	chr10:92617446..92619942-chr10:92629114..92632072,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RPP30-1	chr10:92618127-92618250	XLOC_008558
2	lnc-RPP30-1	chr10:92618126-92618250	NONHSAT015601

Variant related genes	Relation type
HTR7	TF binding region
ENSG00000148688	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv1815232	chr10:92617295-92618616	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv1823335	chr10:92617295-92618616	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv1840527	chr10:92617295-92618616	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92614400-92618600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr10:92614400-92618800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
3	chr10:92614400-92619000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
4	chr10:92614800-92618600	Bivalent/Poised TSS	Fetal Brain Female	brain
5	chr10:92614800-92619200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
6	chr10:92615400-92618600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr10:92615800-92618400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
8	chr10:92616000-92618600	Bivalent/Poised TSS	Fetal Stomach	stomach
9	chr10:92616200-92618400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:92616600-92618400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:92616600-92618600	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
12	chr10:92616800-92618400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
13	chr10:92616800-92618400	Active TSS	Aorta	Aorta
14	chr10:92616800-92618800	Active TSS	NHLF	lung
15	chr10:92617000-92618400	Active TSS	Brain Cingulate Gyrus	brain
16	chr10:92617000-92618400	Active TSS	Psoas Muscle	Psoas
17	chr10:92617000-92618400	Active TSS	HSMMtube	muscle
18	chr10:92617000-92618600	Active TSS	Breast Myoepithelial Primary Cells	Breast
19	chr10:92617000-92618600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
20	chr10:92617200-92618400	Active TSS	H9 Cell Line	embryonic stem cell
21	chr10:92617200-92618400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr10:92617200-92618400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr10:92617200-92618400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr10:92617200-92618400	Active TSS	Brain Angular Gyrus	brain
25	chr10:92617200-92618400	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
26	chr10:92617200-92618400	Bivalent/Poised TSS	Fetal Intestine Small	intestine
27	chr10:92617200-92618400	Active TSS	K562	blood
28	chr10:92617200-92618600	Active TSS	Brain Anterior Caudate	brain
29	chr10:92617200-92618600	Active TSS	Brain Substantia Nigra	brain
30	chr10:92617200-92618600	Active TSS	Rectal Smooth Muscle	rectum
31	chr10:92617400-92618400	Active TSS	iPS-18 Cell Line	embryonic stem cell
32	chr10:92617400-92618400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr10:92617400-92618400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
34	chr10:92617400-92618400	Bivalent/Poised TSS	Primary T cells from cord blood	blood
35	chr10:92617400-92618400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr10:92617400-92618400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr10:92617400-92618400	Active TSS	Brain Inferior Temporal Lobe	brain
38	chr10:92617400-92618400	Active TSS	Left Ventricle	heart
39	chr10:92617400-92618400	Active TSS	Ovary	ovary
40	chr10:92617400-92618400	Active TSS	Skeletal Muscle Male	skeletal muscle
41	chr10:92617400-92618400	Bivalent/Poised TSS	Thymus	Thymus
42	chr10:92617400-92618600	Bivalent/Poised TSS	Brain Germinal Matrix	brain
43	chr10:92617400-92618600	Active TSS	Brain Hippocampus Middle	brain
44	chr10:92617400-92618600	Active TSS	Duodenum Smooth Muscle	Duodenum
45	chr10:92617400-92618600	Active TSS	Pancreatic Islets	Pancreatic Islet
46	chr10:92617400-92618600	Active TSS	Right Atrium	heart
47	chr10:92617400-92618600	Active TSS	Spleen	Spleen
48	chr10:92617600-92618400	Bivalent/Poised TSS	Primary neutrophils fromperipheralblood	blood
49	chr10:92617600-92618400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr10:92617600-92618400	Active TSS	Primary mononuclear cells fromperipheralblood	Blood

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