Variant report

Variant	rs557206446
Chromosome Location	chr15:83602566-83602567
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:83595241..83598969-chr15:83601777..83604663,4	MCF-7	breast:
2	chr15:83600840..83602836-chr15:83603209..83605770,2	K562	blood:
3	chr15:83596164..83597844-chr15:83602191..83603903,2	MCF-7	breast:
4	chr15:83601981..83604800-chr15:83605972..83608317,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	esv12334	chr15:83602318-83604788	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83586600-83619400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr15:83588800-83611600	Weak transcription	Right Atrium	heart
3	chr15:83589400-83602800	Weak transcription	Esophagus	oesophagus
4	chr15:83589600-83605400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr15:83592600-83610600	Weak transcription	Liver	Liver
6	chr15:83593600-83604800	Weak transcription	Psoas Muscle	Psoas
7	chr15:83594200-83602800	Weak transcription	Gastric	stomach
8	chr15:83598600-83608600	Enhancers	Pancreas	Pancrea
9	chr15:83599600-83606200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr15:83599800-83602600	Weak transcription	HSMM	muscle
11	chr15:83600200-83602600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr15:83600200-83602600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr15:83600200-83603000	Weak transcription	HSMMtube	muscle
14	chr15:83600200-83606000	Weak transcription	Right Ventricle	heart
15	chr15:83600800-83603400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr15:83601000-83602600	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr15:83601800-83602800	Weak transcription	Fetal Muscle Trunk	muscle
18	chr15:83602000-83608200	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr15:83602200-83602600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr15:83602200-83602800	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr15:83602200-83602800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr15:83602400-83603000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr15:83602400-83603000	Enhancers	Spleen	Spleen

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