Variant report

Variant	rs557212746
Chromosome Location	chr6:35150661-35150662
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35127079..35138793-chr6:35145525..35157743,32	MCF-7	breast:
2	chr6:35150577..35155004-chr6:35155292..35158233,5	MCF-7	breast:
3	chr6:35113948..35118974-chr6:35150125..35153891,4	MCF-7	breast:
4	chr6:35147410..35151273-chr6:35169982..35172318,3	MCF-7	breast:
5	chr6:35146928..35151829-chr6:35162484..35168348,5	K562	blood:
6	chr6:35149389..35151264-chr6:35177090..35178879,2	MCF-7	breast:
7	chr6:35144082..35146423-chr6:35150116..35152992,2	K562	blood:
8	chr6:35148681..35155694-chr6:35156262..35164857,12	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000124678	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3428128	chr6:35150524-35225843	Bivalent Enhancer Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35146800-35154400	Enhancers	Fetal Heart	heart
2	chr6:35147600-35152400	Weak transcription	Lung	lung
3	chr6:35148000-35151200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:35148200-35151000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:35148200-35151000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:35149800-35151000	Weak transcription	Osteobl	bone
7	chr6:35149800-35154200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:35149800-35154400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr6:35149800-35158000	Weak transcription	Aorta	Aorta
10	chr6:35150000-35150800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:35150000-35151000	Weak transcription	Fetal Lung	lung
12	chr6:35150000-35151000	Weak transcription	HSMMtube	muscle
13	chr6:35150000-35151000	Weak transcription	K562	blood
14	chr6:35150000-35151200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:35150000-35151800	Weak transcription	HepG2	liver
16	chr6:35150000-35152600	Weak transcription	NHLF	lung
17	chr6:35150000-35153000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:35150000-35153000	Weak transcription	HSMM	muscle
19	chr6:35150000-35153400	Weak transcription	Spleen	Spleen
20	chr6:35150200-35151000	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr6:35150200-35151400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:35150200-35152000	Weak transcription	NHEK	skin
23	chr6:35150200-35152400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr6:35150200-35152400	Weak transcription	Fetal Intestine Large	intestine
25	chr6:35150200-35152400	Enhancers	A549	lung
26	chr6:35150200-35152400	Weak transcription	NH-A	brain
27	chr6:35150200-35152400	Weak transcription	NHDF-Ad	bronchial
28	chr6:35150200-35152600	Weak transcription	Fetal Intestine Small	intestine
29	chr6:35150200-35152600	Weak transcription	Stomach Mucosa	stomach
30	chr6:35150200-35153000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:35150200-35153400	Weak transcription	Right Atrium	heart
32	chr6:35150200-35154000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr6:35150200-35154200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr6:35150200-35156600	Weak transcription	Esophagus	oesophagus
35	chr6:35150400-35152000	Weak transcription	Placenta	Placenta
36	chr6:35150400-35152000	Weak transcription	Left Ventricle	heart
37	chr6:35150400-35152200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr6:35150400-35152200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr6:35150400-35152400	Weak transcription	HMEC	breast
40	chr6:35150400-35153200	Weak transcription	Right Ventricle	heart
41	chr6:35150600-35151400	Enhancers	Hela-S3	cervix
42	chr6:35150600-35154200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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